Browse Element(s) Details


OsAffx.3148.1.S1_at

Description tigr:9631.m00558
TID=OsAffx.3148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0632011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06260NANA3+3115404..3120985retrotransposon protein, putative, unclassified
LOC_Os03g06270Os.28943.1.S1_x_at1/113+3121966..3125101retrotransposon protein, putative, unclassified
LOC_Os03g06280OsAffx.21756.3.S1_x_at1/113+3127691..3128221transposon protein, putative, unclassified
LOC_Os03g06290OsAffx.24991.1.S1_x_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06290Os.5657.2.S1_at11/113+3130625..3135429PA domain containing protein, expressed
LOC_Os03g06300NANA3+3135948..3137420pentatricopeptide, putative, expressed
LOC_Os03g06310OsAffx.24992.1.S1_at11/113+3137810..3139942Subtilisin N-terminal Region family protein
LOC_Os03g06320OsAffx.3148.1.S1_at11/113+3141025..3142682hypothetical protein
LOC_Os03g06330Os.16915.1.S1_at11/113+3144377..3147998Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3148.1.S1_at--157--8331Chr03:3141064..3141088 (25 bp)
GGCTGCCTGCATTCATGTCAATTGA
LOC_Os03g06320
OsAffx.3148.1.S1_at--191--8872Chr03:3141089..3141113 (25 bp)
TGATGTTCCATCCAATTGAGATTTG
LOC_Os03g06320
OsAffx.3148.1.S1_at--243--8011Chr03:3141114..3141246 (25 bp)
GGAGGCTGGTCGTTATGAAACTTCA
LOC_Os03g06320
OsAffx.3148.1.S1_at--237--431Chr03:3141255..3141279 (25 bp)
ATCATTTTCTGGCATCTGGGTGGCA
LOC_Os03g06320
OsAffx.3148.1.S1_at--826--6591Chr03:3141293..3141317 (25 bp)
GATTGATGATGGCAACTGTCCATTC
LOC_Os03g06320
OsAffx.3148.1.S1_at--607--3871Chr03:3141308..3141332 (25 bp)
CTGTCCATTCTACGCAGTTCATGAA
LOC_Os03g06320
OsAffx.3148.1.S1_at--624--6871Chr03:3141339..3141363 (25 bp)
GTATACATTTTTTGCAGGAGGATTC
LOC_Os03g06320
OsAffx.3148.1.S1_at--267--6171Chr03:3141356..3141380 (25 bp)
GAGGATTCTTATGGCCAGTTGCAGC
LOC_Os03g06320
OsAffx.3148.1.S1_at--32--10571Chr03:3142354..3142374 (21 bp)
TTGCAGGGCTTTCTAGGACCAGACA
LOC_Os03g06320
OsAffx.3148.1.S1_at--427--2191Chr03:3142372..3142396 (25 bp)
ACAACTATGGAAGCCCAAGTGGACC
LOC_Os03g06320
OsAffx.3148.1.S1_at--216--2371Chr03:3142427..3142451 (25 bp)
AAAGCCTTACAGACTTGTGCTAATA
LOC_Os03g06320
Target Sequence 
GGCTGCCTGCATTCATGTCAATTGATGATGTTCCATCCAATTGAGATTTGGGAGGCTGGTCGTTATGAAACTTCAGATGC
CAAATCATTTTCTGGCATCTGGGTGGCAACTGGCAAGGATGGATTGATGATGGCAACTGTCCATTCTACGCAGTTCATGA
AAAATGAGTATACATTTTTTGCAGGAGGATTCTTATGGCCAGTTGCAGCCTTGCAGGGCTTTCTAGGACCAGACAACTAT
GGAAGCCCAAGTGGACCCCGTTTCTTTGACGTAACAAAACTTTACACAAAGCCTTACAGACTTGTGCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis