Browse Element(s) Details


Os.27069.1.A1_at

Description gb:AK068259.1
DB_XREF= gi:32978277
TID=Os.27069.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149O16, full insert sequence.
FL= gb:AK068259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06340Os.12465.1.S1_at11/113+3149214..3155533XS domain containing protein, expressed
LOC_Os03g06350Os.22711.1.A1_at10/113+3157340..3158701uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27069.1.A1_at--607--7931Chr03:3178506..3178530 (25 bp)
GGATATTCTTTACCCTTCGAATCGG
LOC_Os03g06400
Os.27069.1.A1_at--947--3311Chr03:3178543..3178567 (25 bp)
CACATATTCTTGTTTCCGGCAGGTA
LOC_Os03g06400
Os.27069.1.A1_at--1152--4751Chr03:3178568..3178592 (25 bp)
GCTGCTCACCATGGAATCGTTTGAC
LOC_Os03g06400
Os.27069.1.A1_at--1160--5731Chr03:3178590..3178614 (25 bp)
GACGGCGAATGCTGCTGTGTACCAA
LOC_Os03g06400
Os.27069.1.A1_at--626--3071Chr03:3178655..3178679 (25 bp)
AATCAATCGCCAGGTCGTTTTCTTC
LOC_Os03g06400
Os.27069.1.A1_at--413--1511Chr03:3178706..3178730 (25 bp)
AGCAGTTGCCGCGTCCAAAAAAGAT
LOC_Os03g06400
Os.27069.1.A1_at--986--9851Chr03:3178777..3178801 (25 bp)
TACACAAGCTTTCTCCAGTCGGATT
LOC_Os03g06400
Os.27069.1.A1_at--85--411Chr03:3178840..3178864 (25 bp)
ATCAGAGTGCTAATTCGCCTCTTCT
LOC_Os03g06400
Os.27069.1.A1_at--1002--2231Chr03:3178923..3178947 (25 bp)
ACAATTTCTGTCCATTTTCCTTACT
LOC_Os03g06400
Os.27069.1.A1_at--166--9911Chr03:3178944..3178968 (25 bp)
TACTGCCGTTCGTAGCTGAAGGTTC
LOC_Os03g06400
Os.27069.1.A1_at--516--8431Chr03:3178970..3178994 (25 bp)
GGCCTCACAGGCAGATATGTTCATT
LOC_Os03g06400
Target Sequence 
GGATATTCTTTACCCTTCGAATCGGATGAAAGTATCGCACATATTCTTGTTTCCGGCAGGTAGCTGCTCACCATGGAATC
GTTTGACGGCGAATGCTGCTGTGTACCAACAAAAAGAGATAAAAATCAAGCAATTGTCGTGCAAGTACCAATCAATCGCC
AGGTCGTTTTCTTCTTTCCTTACCCAATGGAGGGGATTGGAGCAGTTGCCGCGTCCAAAAAAGATCAGAAATCTGCCTGC
TCGTCGACATGGATGCATTGGATCATACAGCTACACAAGCTTTCTCCAGTCGGATTGGTAGATTACACGCGTAATCGCCG
ACCAGATGGAGAGAATCAGAGTGCTAATTCGCCTCTTCTTCACCATGAACACGAAGCTTNTCATGATNCTGTCGCCGATA
GCTTCGCCTGAACTANTACAATTTCTGTCCATTTTCCTTACTGCCGTTCGTAGCTGAAGGTTCCGGCCTCACAGGCAGAT
ATGTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27069.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis