Browse Element(s) Details


Os.25297.1.S1_at

Description gb:AK068372.1
DB_XREF= gi:32978390
TID=Os.25297.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151B11, full insert sequence.
FL= gb:AK068372.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g064408/11RNA helicase SDE3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os03g06470OsAffx.12753.1.S1_at11/113+3217583..3218031hypothetical protein
LOC_Os03g06480OsAffx.24369.11.S1_s_at11/113+3220844..3221853expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009616biological_processvirus induced gene silencing
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25297.1.S1_at--1084--8111Chr03:3195162..3195186 (25 bp)
GGACTAACATTCAGGCACTCTGTAG
LOC_Os03g06440
Os.25297.1.S1_at--615--5111Chr03:3195148..3195172 (25 bp)
GCACTCTGTAGCCTTTCCTTGAAAG
LOC_Os03g06440
Os.25297.1.S1_at--787--111Chr03:3195100..3195124 (25 bp)
ATTCTTCTGTCTGCAGTCTGTAGCC
LOC_Os03g06440
Os.25297.1.S1_at--467--8751Chr03:3195082..3195106 (25 bp)
TGTAGCCTTCCCTTGGATTTCTTGA
LOC_Os03g06440
Os.25297.1.S1_at--976--7931Chr03:3195068..3195092 (25 bp)
GGATTTCTTGATGCCATTATCTACC
LOC_Os03g06440
Os.25297.1.S1_at--285--2391Chr03:3194997..3195021 (25 bp)
AAACTGATTATCTTGCTAGCTATGG
LOC_Os03g06440
Os.25297.1.S1_at--451--10191Chr03:3194965..3194989 (25 bp)
TATAGCATCCTCACTTGCTGTTATC
LOC_Os03g06440
Os.25297.1.S1_at--612--8031NONE
GGAGTATACTTACCCTGTCTCAGGT
NONE
Os.25297.1.S1_at--1010--5071Chr03:3194913..3194937 (25 bp)
GCAGCCTGTGCTGATTATGTGCCAT
LOC_Os03g06440
Os.25297.1.S1_at--156--7851NONE
GGTAGTTGATTATTAGCCTTCCGAC
NONE
Os.25297.1.S1_at--234--9971NONE
TAGCCTTCCGACAGATTCATAATTT
NONE
Target Sequence 
GGACTAACATTCAGGCACTCTGTAGCCTTTCCTTGAAAGGCTTTCAGCTCACCCTCAGNCCCATTCTTCTGTCTGCAGTC
TGTAGCCTTCCCTTGGATTTCTTGATGCCATTATCTACCTGGNGTTTGAGTATACGGGAACAAATATGTTCCTGTGAAAA
CTCCNAAACTGATTATCTTGCTAGCTATGGCAATATATATAGCATCCTCACTTGCTGTTATCNGGAGTATACTTACCCTG
TCTCAGGTTGCAGCCTGTGCTGATTATGTGCCATGGCTTAAAATACATGCAGTTAATACTTTTTAGAACGTAAATAAAAG
TATTTAAAATTTGGGGGATAAAGAATTCATCGACAAATTTTTCGTCCTTTTTTTCCTGTTACATTTGAATGACTAGTTGG
ATAGAAGGGAAATAGTAGTAGGACAAGTGCATGTGGTGATCATGTGGGAAGATTGGAGAGCAATCAGTATCTGGTAGGAA
TGGGGGCTAATCTAGTTTCTGATGGATGAAGGGTAACAGACATTTGTGAAGAGCCATTGAGGTAGTTGATTATTAGCCTT
CCGACAGATTCATAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis