Browse Element(s) Details


OsAffx.12753.1.S1_at

Description tigr:9631.m00574
TID=OsAffx.12753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0647011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os03g06470OsAffx.12753.1.S1_at11/113+3217583..3218031hypothetical protein
LOC_Os03g06480OsAffx.24369.11.S1_s_at11/113+3220844..3221853expressed protein
LOC_Os03g06490Os.5567.1.S1_at11/113+3232098..3236966expressed protein
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12753.1.S1_at--716--891Chr03:3217968..3217992 (25 bp)
AGGCTGCTGGGAACTACTCTTGGAT
LOC_Os03g06470
OsAffx.12753.1.S1_at--555--2011Chr03:3217953..3217977 (25 bp)
ACTCTTGGATTTATTCAGCTCCTAC
LOC_Os03g06470
OsAffx.12753.1.S1_at--302--9671Chr03:3217940..3217963 (24 bp)
TCAGCTCCTACAACCATCAATAATA
LOC_Os03g06470
OsAffx.12753.1.S1_at--339--3111Chr03:3217822..3217843 (22 bp)
AATATCAAATCTTCGCTCTCACTTC
LOC_Os03g06470
OsAffx.12753.1.S1_at--815--4811Chr03:3217808..3217832 (25 bp)
GCTCTCACTTCATCTTCAAGTCTTT
LOC_Os03g06470
OsAffx.12753.1.S1_at--475--2851Chr03:3217791..3217815 (25 bp)
AAGTCTTTCGTATTGGCTGCTGCAA
LOC_Os03g06470
OsAffx.12753.1.S1_at--797--5191Chr03:3217770..3217794 (25 bp)
GCAATTCAGACGCAGGACTTCTGGT
LOC_Os03g06470
OsAffx.12753.1.S1_at--1043--2051Chr03:3217754..3217778 (25 bp)
ACTTCTGGTCAGTTGTCGATGCTAT
LOC_Os03g06470
OsAffx.12753.1.S1_at--837--111Chr03:3217710..3217733 (24 bp)
ATTCTACTATACATGTGGGCTCGGA
LOC_Os03g06470
OsAffx.12753.1.S1_at--382--4791Chr03:3217638..3217658 (21 bp)
GCTCGGATTGGTTTTCGCCTTTAAG
LOC_Os03g06470
OsAffx.12753.1.S1_at--1071--9311Chr03:3217624..3217648 (25 bp)
TCGCCTTTAAGCTGGAGCGTGGCAC
LOC_Os03g06470
Target Sequence 
AGGCTGCTGGGAACTACTCTTGGATTTATTCAGCTCCTACAACCATCAATAATATCAAATCTTCGCTCTCACTTCATCTT
CAAGTCTTTCGTATTGGCTGCTGCAATTCAGACGCAGGACTTCTGGTCAGTTGTCGATGCTATAACTGGTGAAGTTTGTT
ACAATTCTACTATACATGTGGGCTCGGATTGGTTTTCGCCTTTAAGCTGGAGCGTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis