Browse Element(s) Details


OsAffx.3149.1.S1_at

Description tigr:9631.m00573
TID=OsAffx.3149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EndonucleaseExonucleasephosphatase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0646011/11Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os03g06470OsAffx.12753.1.S1_at11/113+3217583..3218031hypothetical protein
LOC_Os03g06480OsAffx.24369.11.S1_s_at11/113+3220844..3221853expressed protein
LOC_Os03g06490Os.5567.1.S1_at11/113+3232098..3236966expressed protein
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3149.1.S1_at--21--10031Chr03:3210018..3210042 (25 bp)
TAGAAAGACCAGGTTTCCAATGGTT
LOC_Os03g06460
OsAffx.3149.1.S1_at--339--5651Chr03:3209989..3210013 (25 bp)
GACAGTATGAGCGTTCACCAGAAAC
LOC_Os03g06460
OsAffx.3149.1.S1_at--854--5911Chr03:3209859..3209981 (25 bp)
GAGCATGAACGAATCATCTGGCTTG
LOC_Os03g06460
OsAffx.3149.1.S1_at--438--2251Chr03:3209827..3209851 (25 bp)
AAATTACAGAATCGCGCTTTCCTAC
LOC_Os03g06460
OsAffx.3149.1.S1_at--743--5511Chr03:3209414..3209438 (25 bp)
GAAAATATACTTCCCGCCAACATAC
LOC_Os03g06460
OsAffx.3149.1.S1_at--834--7551Chr03:3209206..3209230 (25 bp)
GGGCCTTAGTCAACTGTCATATGTT
LOC_Os03g06460
OsAffx.3149.1.S1_at--281--4071Chr03:3209181..3209205 (25 bp)
CGAGGTGAATCTCGCTTTTCAGATC
LOC_Os03g06460
OsAffx.3149.1.S1_at--478--4891Chr03:3209168..3209192 (25 bp)
GCTTTTCAGATCATAGACCGGTCTA
LOC_Os03g06460
OsAffx.3149.1.S1_at--690--3971Chr03:3209150..3209174 (25 bp)
CGGTCTACAGTGTCTTCAGTGCAGA
LOC_Os03g06460
OsAffx.3149.1.S1_at--751--1951Chr03:3209071..3209095 (25 bp)
ACTGGACATTGAGGAATTGCTGCCC
LOC_Os03g06460
OsAffx.3149.1.S1_at--256--4551Chr03:3209050..3209074 (25 bp)
GCCCTACTCATATGGATATACTGAT
LOC_Os03g06460
Target Sequence 
TAGAAAGACCAGGTTTCCAATGGTTTATGGACAGTATGAGCGTTCACCAGAAACTATCTTAGAGCATGAACGAATCATCT
GGCTTGGGGACCTAAATTACAGAATCGCGCTTTCCTACCGATCGGTGAAGGCCCTCGTGGAGATGCGCAATTGGAAAGCA
TTGCTGGAGAAAGATCAGTTAAGGATTGAGCAAAGAGGTGGGCGAGTATTCGTTGGGTGGAACGAGGGGAAAATATACTT
CCCGCCAACATACAAATACTCGAATAATTCCGACAAGTACGCTGGGGATGACATGAACCAGAAGGAAAAGAAGAGAACGC
CTGCATGGTGTGATCGTATTTTATGGTATGGAAGGGGCCTTAGTCAACTGTCATATGTTCGAGGTGAATCTCGCTTTTCA
GATCATAGACCGGTCTACAGTGTCTTCAGTGCAGAAGTAGAATCAATCAATCATAGTAGAATCCAGAAGATGAGTTGTTC
AAGTTCACAACTGGACATTGAGGAATTGCTGCCCTACTCATATGGATATACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis