Browse Element(s) Details


OsAffx.12752.1.S1_at

Description tigr:9631.m00570
TID=OsAffx.12752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0643011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12752.1.S1_at--701--7251Chr03:3192115..3192139 (25 bp)
GTGCACCAGGGGGTACATCCTCGGC
LOC_Os03g06430
OsAffx.12752.1.S1_at--390--9871Chr03:3192102..3192126 (25 bp)
TACATCCTCGGCGTGAAGGCCGACT
LOC_Os03g06430
OsAffx.12752.1.S1_at--1056--2091Chr03:3192101..3192125 (25 bp)
ACATCCTCGGCGTGAAGGCCGACTT
LOC_Os03g06430
OsAffx.12752.1.S1_at--451--6211Chr03:3192030..3192054 (25 bp)
GAGGCGGCCAAGCTTGGGAGGAACA
LOC_Os03g06430
OsAffx.12752.1.S1_at--605--6211Chr03:3191985..3192009 (25 bp)
GAGGCTGTGAGGGATCACATGTCCT
LOC_Os03g06430
OsAffx.12752.1.S1_at--155--4731Chr03:3191982..3192006 (25 bp)
GCTGTGAGGGATCACATGTCCTTCT
LOC_Os03g06430
OsAffx.12752.1.S1_at--941--8671Chr03:3191980..3192004 (25 bp)
TGTGAGGGATCACATGTCCTTCTGC
LOC_Os03g06430
OsAffx.12752.1.S1_at--752--4311Chr03:3191963..3191987 (25 bp)
CCTTCTGCGGCAAGTGCAGGAAGAA
LOC_Os03g06430
OsAffx.12752.1.S1_at--1045--5131Chr03:3191954..3191978 (25 bp)
GCAAGTGCAGGAAGAACCCGGCCTT
LOC_Os03g06430
OsAffx.12752.1.S1_at--792--1091Chr03:3191951..3191975 (25 bp)
AGTGCAGGAAGAACCCGGCCTTCCG
LOC_Os03g06430
OsAffx.12752.1.S1_at--262--3911Chr03:3191936..3191960 (25 bp)
CGGCCTTCCGGGTAGCCGACGGCAT
LOC_Os03g06430
Target Sequence 
GTGCACCAGGGGGTACATCCTCGGCGTGAAGGCCGACTTCGGCGGGCGGTGGCTGTGCGGCCTCTGCTCGGAGGCGGTGA
GGGACGAGGCGGCCAAGCTTGGGAGGAACAGAGGCGGCGGCGGAATGGAGGAGGCTGTGAGGGATCACATGTCCTTCTGC
GGCAAGTGCAGGAAGAACCCGGCCTTCCGGGTAGCCGACGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis