Browse Element(s) Details


Os.7464.1.S1_at

Description gb:AK071081.1
DB_XREF= gi:32981104
TID=Os.7464.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076I11, full insert sequence.
FL= gb:AK071081.1 gb:AK104859.1 gb:AK100712.1 gb:AK064836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0642011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06360Os.27956.1.S1_at11/113+3163607..3165047Seed maturation protein, expressed
LOC_Os03g06370Os.51730.1.A1_x_at11/113+3165893..3169159expressed protein
LOC_Os03g06370Os.51730.1.A1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06370OsAffx.12750.1.S1_s_at11/113+3165893..3169159expressed protein
LOC_Os03g06390Os.10742.1.S1_at11/113+3174861..3175759expressed protein
LOC_Os03g06400Os.27069.1.A1_at11/113+3176805..3179093expressed protein
LOC_Os03g06410Os.2622.1.S1_at11/113+3180456..3187404EDR1, putative, expressed
LOC_Os03g06420Os.7464.1.S2_at11/113+3187973..3190651expressed protein
LOC_Os03g06420Os.7464.1.S1_at11/113+3187973..3190651expressed protein
LOC_Os03g06430OsAffx.12752.1.S1_at11/113+3191902..3192186expressed protein
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7464.1.S1_at--97--7591Chr03:3189286..3189310 (25 bp)
GGGCAGGTCCTTGTACATAGGCTAT
LOC_Os03g06420
Os.7464.1.S1_at--136--5971Chr03:3189347..3189371 (25 bp)
GAGAATGGCCATCTTTCACCTGGAT
LOC_Os03g06420
Os.7464.1.S1_at--816--7731Chr03:3189372..3189396 (25 bp)
GGTGGTTCTGCATAGTTCATCAACA
LOC_Os03g06420
Os.7464.1.S1_at--69--1491Chr03:3189494..3189518 (25 bp)
AGCACAGCAGTTTCTGGGTAGCCTT
LOC_Os03g06420
Os.7464.1.S1_at--947--6951Chr03:3189511..3189535 (25 bp)
GTAGCCTTTGTAGCTTGTGGTCACC
LOC_Os03g06420
Os.7464.1.S1_at--135--7511Chr03:3189527..3189551 (25 bp)
GTGGTCACCTCTATGTTACTAATGT
LOC_Os03g06420
Os.7464.1.S1_at--565--2611Chr03:3189619..3189643 (25 bp)
AACCTTTAGTCGTAGTCTGTCCTTG
LOC_Os03g06420
Os.7464.1.S1_at--794--10791Chr03:3189641..3189665 (25 bp)
TTGTTCCTGGTAGTTCATGCCTGGC
LOC_Os03g06420
Os.7464.1.S1_at--530--6551Chr03:3189716..3189740 (25 bp)
GATTATCTGGCAGCTATCCATGTGT
LOC_Os03g06420
Os.7464.1.S1_at--62--651Chr03:3189775..3189799 (25 bp)
ATGCATTTTGCTTCACCTTGTAGAC
LOC_Os03g06420
Os.7464.1.S1_at--113--10791Chr03:3189792..3189816 (25 bp)
TTGTAGACATTCCTTGGTTCCTCTG
LOC_Os03g06420
Target Sequence 
GGGCAGGTCCTTGTACATAGGCTATCTGCAAACTAACCTTGGTAGTGTGTATAGAGTAACCGAGAATGGCCATCTTTCAC
CTGGATGGTGGTTCTGCATAGTTCATCAACAGGAGGTACTTNAGGCAGGCAAAGCACCTCAAGTATGCATGGCAGCGTGA
AACTGCGGTGAATGACTTGGTGGTGAGACTGTTGGTTGTCTGGATGAGAGCACAGCAGTTTCTGGGTAGCCTTTGTAGCT
TGTGGTCACCTCTATGTTACTAATGTTCTTTCAGCCTTTTGGGTATTCCTTCTTTAGGTTTTAGATCACCATTATCCATG
GTCTCACATCATTAACCTTTAGTCGTAGTCTGTCCTTGTTCCTGGTAGTTCATGCCTGGCCAGGGTATGATAGTGTCTTA
GTACTGTTCAAATGCTTAGATGTCTGCATCTGATTATCTGGCAGCTATCCATGTGTGAAATATCTGTAGGATAGCAATAT
CTTGCAGTGCATGCATTTTGCTTCACCTTGTAGACATTCCTTGGTTCCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis