Browse Element(s) Details


OsAffx.24369.11.S1_s_at

Description tigr:9631.m00575
TID=OsAffx.24369.11
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0648011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06440Os.25297.1.S1_at8/113+3194593..3199297RNA helicase SDE3, putative, expressed
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os03g06470OsAffx.12753.1.S1_at11/113+3217583..3218031hypothetical protein
LOC_Os03g06480OsAffx.24369.11.S1_s_at11/113+3220844..3221853expressed protein
LOC_Os03g06490Os.5567.1.S1_at11/113+3232098..3236966expressed protein
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24369.11.S1_s_at--935--4071Chr03:3221104..3221128 (25 bp)
CGAAGACGAAGGCAATAAAGGTCAT
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--362--3811Chr03:3221062..3221086 (25 bp)
CTCCGGCAGGAGAAGGTTCCGTCAC
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--358--3111Chr03:3220977..3221001 (25 bp)
AATATCAGTGTAGGCATCGATCCAA
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--136--7431Chr03:3220970..3220994 (25 bp)
GTGTAGGCATCGATCCAACTTAGTG
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--920--912Chr03:4985359..4985473 (24 bp)
AGGCATCGATCCAACTTAGTGAACT
NONE
OsAffx.24369.11.S1_s_at--878--4031Chr03:3220960..3220984 (25 bp)
CGATCCAACTTAGTGAACTGAATAA
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--1000--9731Chr03:3220938..3220962 (25 bp)
TAATCATCAGTGTTGTTGGCATCGA
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--396--1111Chr03:3220930..3220954 (25 bp)
AGTGTTGTTGGCATCGATCCAGCTT
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--1065--8811Chr03:3220925..3220949 (25 bp)
TGTTGGCATCGATCCAGCTTAGTTA
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--645--8271Chr03:3220921..3220945 (25 bp)
GGCATCGATCCAGCTTAGTTAGTGT
LOC_Os03g06480
OsAffx.24369.11.S1_s_at--668--511Chr03:3220918..3220942 (25 bp)
ATCGATCCAGCTTAGTTAGTGTGGG
LOC_Os03g06480
Target Sequence 
CGAAGACGAAGGCAATAAAGGTCATGCTCGAGTTGCTGCTACCTCCGGCAGGAGAAGGTTCCGTCACGGGGTCGCCCTGA
AGAAGAACCAATCAGGAGGAGGAAGCATTAGAAAGATATGATGAATAAATATCAGTGTAGGCATCGATCCAACTTAGTGA
ACTGAATAATCATCAGTGTTGTTGGCATCGATCCAGCTTAGTTAGTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24369.11.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis