Browse Element(s) Details


Os.5567.1.S1_at

Description gb:AK120446.1
DB_XREF= gi:37990069
TID=Os.5567.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099P14, full insert sequence.
FL= gb:AK120446.1 gb:AK121425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os03g06470OsAffx.12753.1.S1_at11/113+3217583..3218031hypothetical protein
LOC_Os03g06480OsAffx.24369.11.S1_s_at11/113+3220844..3221853expressed protein
LOC_Os03g06490Os.5567.1.S1_at11/113+3232098..3236966expressed protein
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06520Os.10754.1.S1_at10/113+3250261..3255989Sulfate transporter 3.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5567.1.S1_at--178--2351Chr03:3236383..3236407 (25 bp)
AAAGAAGCATTCCTCAGACGCACTG
LOC_Os03g06490
Os.5567.1.S1_at--113--791Chr03:3236413..3236437 (25 bp)
ATGTGGGATCGGCATGGTCATCTCT
LOC_Os03g06490
Os.5567.1.S1_at--107--2831Chr03:3236452..3236476 (25 bp)
AAGTTGCTGAATGCCTACACTGTTT
LOC_Os03g06490
Os.5567.1.S1_at--1106--9851Chr03:3236467..3236491 (25 bp)
TACACTGTTTCTGGCTTCAGGGTGC
LOC_Os03g06490
Os.5567.1.S1_at--446--4491Chr03:3236490..3236514 (25 bp)
GCCGGAGATGCCTAGTCAGTTTGAC
LOC_Os03g06490
Os.5567.1.S1_at--575--1971Chr03:3236642..3236666 (25 bp)
ACTGAGAGTTTGTTCGCTGTGCTCC
LOC_Os03g06490
Os.5567.1.S1_at--403--7891Chr03:3236762..3236786 (25 bp)
GGTTCACTGAGAGTTCTTTCACTGT
LOC_Os03g06490
Os.5567.1.S1_at--18--7171Chr03:3236792..3236816 (25 bp)
GTCTCTTTCGTTGATAGTCCTGATA
LOC_Os03g06490
Os.5567.1.S1_at--749--6471Chr03:3236823..3236847 (25 bp)
GATACTCGCGTCCAGAAACTACTAT
LOC_Os03g06490
Os.5567.1.S1_at--968--6331Chr03:3236891..3236915 (25 bp)
GATGCTATGATACTTGCGTCTTGAT
LOC_Os03g06490
Os.5567.1.S1_at--141--10111Chr03:3236942..3236966 (25 bp)
TATGGCATATACTGACTTCCTCGTT
LOC_Os03g06490
Target Sequence 
AAAGAAGCATTCCTCAGACGCACTGCGGAGATGTGGGATCGGCATGGTCATCTCTTGACCAATGCCAAGAAGTTGCTGAA
TGCCTACACTGTTTCTGGCTTCAGGGTGCCGGAGATGCCTAGTCAGTTTGACGCACAGTTNTGATATGTTCGCTGTGCTC
CCGGCTTATACTCATACTTCGGTCTCTTGATGCTGTGATGTAGGTTCACTGAGAGTTNTGATAGCCACGGTCTCGTTGTG
ATGTTGTGATACTAGGTTCACTGAGAGTTTGTTCGCTGTGCTCCCGGCTTATACTCATACTTCGGTCTCTTGTGATGCTG
TGATGTAGGTTCACTGAGAGTTNTGATAGCCACGGTCTCGTTGTGATGTTGTGATATTAGGTTCACTGAGAGTTCTTTCA
CTGTCTCTTGTCTCTTTCGTTGATAGTCCTGATAGTCCTGGATACTCGCGTCCAGAAACTACTATTTTGTGATGCTGCTA
TTATACTTGCGAGATACTACTATTTTGTGATGCTATGATACTTGCGTCTTGATACTNCTTTGTGATGTCATTGAGACAAT
ATGGCATATACTGACTTCCTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis