Browse Element(s) Details


Os.10754.1.S1_at

Description gb:AK066932.1
DB_XREF= gi:32976950
TID=Os.10754.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative sulfate transporter ATST1 (OJ1607A12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093F02, full insert sequence.
FL= gb:AK066932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0652010/11Sulfate transporter 3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06490Os.5567.1.S1_at11/113+3232098..3236966expressed protein
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06520Os.10754.1.S1_at10/113+3250261..3255989Sulfate transporter 3.1, putative, expressed
LOC_Os03g06530OsAffx.24994.2.S1_s_at11/113+3267653..3268189hypothetical protein
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0005886cellular_componentplasma membrane
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10754.1.S1_at--103--7791Chr03:3250860..3250881 (22 bp)
GGTGCGGTCGGAAGCATCGACACCA
LOC_Os03g06520
Os.10754.1.S1_at--696--8171Chr03:3250851..3250875 (25 bp)
GGAAGCATCGACACCAGCGGGACGA
LOC_Os03g06520
Os.10754.1.S1_at--942--4971Chr03:3250847..3250871 (25 bp)
GCATCGACACCAGCGGGACGAGCAT
LOC_Os03g06520
Os.10754.1.S1_at--668--8111Chr03:3250832..3250856 (25 bp)
GGACGAGCATGCTGGATGAACTCAG
LOC_Os03g06520
Os.10754.1.S1_at--1094--5452Chr07:23205850..23205869 (20 bp)
GAACTCAGGAAGACCCTGGACAGGA
NONE
Os.10754.1.S1_at--168--4311Chr03:3250674..3250696 (23 bp)
CCTTCAGATTGTGTTGGCGAACCCG
LOC_Os03g06520
Os.10754.1.S1_at--892--8851Chr03:3250543..3250567 (25 bp)
TGATGCACTCGCAGAAGCCGGGAAT
LOC_Os03g06520
Os.10754.1.S1_at--554--151NONE
ATTATGAGCCTCAGAGCCTGTACAG
NONE
Os.10754.1.S1_at--966--4451Chr03:3250315..3250339 (25 bp)
GCCTCAGAGCCTGTACAGATGCATT
LOC_Os03g06520
Os.10754.1.S1_at--891--6311Chr03:3250298..3250322 (25 bp)
GATGCATTGGAGCTACTTCTTTGAA
LOC_Os03g06520
Os.10754.1.S1_at--997--5691Chr03:3250268..3250292 (25 bp)
GACTCAAGATCATACCTTTTTTCCA
LOC_Os03g06520
Target Sequence 
GGTGCGGTCGGAAGCATCGACACCAGCGGGACGAGCATGCTGGATGAACTCAGGAAGACCCTGGACAGGAGGGNCCTTCA
GATTGTGTTGGCGAACCCGGGGAGCGAGATCATGAAGAAGNTGGACAGCTCCAAGGTGCTTGAGGCGATCGGCCNATGAG
TGGATCTTCCCCACGGTGGGCGAGGCGGTGGCNGGAGTGCGACTTNGTGATGCACTCGCAGAAGCCGGGAATGGTCATGG
GCAGTGGAGCACCCCATGAGAACCTNGGTCTGATTGGAGAAGAACTTACTGTAGTATGGTTGAGTTTGATCAACCTGAGG
TTGTCAACAAGCAAAGCCGAGATANATATAAGCATCTCGAGTATTGTAGTACTAAGTTGTCAAGGAAGTTCAAAGGAAAA
AAAATCACCTTTTTTTTTGCANAGGCGAAAATTATGAGCCTCAGAGCCTGTACAGATGCATTGGAGCTACTTCTTTGAAG
TATTGACTCAAGATCATACCTTTTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis