Browse Element(s) Details


OsAffx.24994.2.S1_s_at

Description tigr:9631.m00580
TID=OsAffx.24994.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0653011/11hypothetical protein
LOC_Os11g0579011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06520Os.10754.1.S1_at10/113+3250261..3255989Sulfate transporter 3.1, putative, expressed
LOC_Os03g06530OsAffx.24994.2.S1_s_at11/113+3267653..3268189hypothetical protein
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24994.2.S1_s_at--1028--992Chr11:2673761..2673785 (25 bp)
AGGATCTTGTCCTTCTTGATCCGGA
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--862--7952Chr11:2673762..2673786 (25 bp)
GGATCTTGTCCTTCTTGATCCGGAC
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--1003--6412Chr11:2673763..2673787 (25 bp)
GATCTTGTCCTTCTTGATCCGGACC
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--143--9572Chr11:2673774..2673798 (25 bp)
TCTTGATCCGGACCACCTAGTAGGA
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--379--10712Chr11:2673776..2673800 (25 bp)
TTGATCCGGACCACCTAGTAGGAGC
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--875--8832Chr11:2673777..2673801 (25 bp)
TGATCCGGACCACCTAGTAGGAGCC
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--541--9412Chr11:2673839..2673863 (25 bp)
TCGTCGACGTCGCTGCTATCGTGCT
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--144--7232Chr11:2673841..2673865 (25 bp)
GTCGACGTCGCTGCTATCGTGCTTG
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--477--4092Chr11:2673843..2673867 (25 bp)
CGACGTCGCTGCTATCGTGCTTGCC
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--505--1872Chr11:2673908..2673932 (25 bp)
ACGAGCTGCATGACGCGAGCGTGGC
LOC_Os11g05790
OsAffx.24994.2.S1_s_at--697--7552Chr11:2673928..2673952 (25 bp)
GTGGCCGTGCGGCAGAGCGCGGGTC
LOC_Os11g05790
Target Sequence 
AGGATCTTGTCCTTCTTGATCCGGACCACCTAGTAGGAGCCCCGCGGCGAGATGTGCTCACCGTCGGCGTTGGCGCCCTC
GTCGACGTCGCTGCTATCGTGCTTGCCGTCCACGTCGTTGCCGCCGCGGTGGTTCTTGGAGATGGAGACGAGCTGCATGA
CGCGAGCGTGGCCGTGCGGCAGAGCGCGGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24994.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis