Browse Element(s) Details


Os.27797.1.A1_at

Description gb:CB658382
DB_XREF= gi:29662107
DB_XREF=OSJNEc14G04.r
CLONE=OSJNEc14G04
TID=Os.27797.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1607A12.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0657011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06530OsAffx.24994.2.S1_s_at11/113+3267653..3268189hypothetical protein
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27797.1.A1_at--693--4011Chr03:3290707..3290731 (25 bp)
CGTCGTCGGAGCTGCTGTGCTGCCC
LOC_Os03g06570
Os.27797.1.A1_at--384--8691Chr03:3290722..3290746 (25 bp)
TGTGCTGCCCGAGCTACATGGCCAA
LOC_Os03g06570
Os.27797.1.A1_at--643--51Chr03:3291463..3291487 (25 bp)
ATTGCCGGACGAACCGGGAGCTTCG
LOC_Os03g06570
Os.27797.1.A1_at--849--511Chr03:3291491..3291515 (25 bp)
ATCGCCATGGATTGAATGTTCGTCA
LOC_Os03g06570
Os.27797.1.A1_at--666--731Chr03:3291506..3291530 (25 bp)
ATGTTCGTCAGTTTGCTCGACGTGT
LOC_Os03g06570
Os.27797.1.A1_at--692--10271Chr03:3291517..3291541 (25 bp)
TTTGCTCGACGTGTGATGGATTCAG
LOC_Os03g06570
Os.27797.1.A1_at--930--7951Chr03:3291541..3291565 (25 bp)
GGATCATGAACTGTACATTCTGTGT
LOC_Os03g06570
Os.27797.1.A1_at--708--3591Chr03:3291556..3291580 (25 bp)
CATTCTGTGTAGGTTATTCTGTGTT
LOC_Os03g06570
Os.27797.1.A1_at--382--6931Chr03:3291564..3291588 (25 bp)
GTAGGTTATTCTGTGTTGTGGTGAC
LOC_Os03g06570
Os.27797.1.A1_at--1156--7751Chr03:3291583..3291607 (25 bp)
GGTGACTGTAACATACCAGGAATAC
LOC_Os03g06570
Os.27797.1.A1_at--1082--4591Chr03:3291624..3291648 (25 bp)
GCGAAATGTAATAAGCAATCCACTG
LOC_Os03g06570
Target Sequence 
CGTCGTCGGAGCTGCTGTGCTGCCCGAGCTACATGGCCAACACGGAGTCGTCCCGCGCCAAGGCGCGGTCCCAGAGCGCG
CCGAGGCAGCGCACCGACGCGCTGGAGCGGCAGCCGAGCCGCCGGAAGAGCGGCGGCGGCGGCGGCGGCGCCAAGATGCA
GCGGTCGTCGTCGTCGCACGCCGCGGCGGCCCAGCGCGGCGCGCAGTTCCCATGGCCGGTGATCAAGCTGGACACGTCGA
GCGCGTCGCTCAAGGACAGCGAGTGCGGGTCGACGAGCTCCGTTCTCACCGCCGCCACCGTCTACAGCCGGACGCGGTCG
CTAGTCGGATTCGAGGTGNGNNNNGNNTTNNNNNNNNNNNNNNNNNTNNNNNNNNNNATTGCCGGACGAACCGGGAGCTT
CGCCAATCGCCATGGATTGAATGTTCGTCAGTTTGCTCGACGTGTGATGGATTCAGGATCATGAACTGTACATTCTGTGT
AGGTTATTCTGTGTTGTGGTGACTGTAACATACCAGGAATACATACTGCTAAGTGAAAGCGAAATGTAATAAGCAATCCA
CTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27797.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis