Browse Element(s) Details


Os.11808.1.S1_at

Description gb:AK059911.1
DB_XREF= gi:32969929
TID=Os.11808.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1607A12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C11, full insert sequence.
FL= gb:AK059911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0658011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11808.1.S1_at--899--9971Chr03:3295732..3295756 (25 bp)
TACCATTTCCATTTCATCTGTGATC
LOC_Os03g06580
Os.11808.1.S1_at--1022--3111Chr03:3295805..3295829 (25 bp)
CAATTAGCTTACTGCGGTTCGGGAG
LOC_Os03g06580
Os.11808.1.S1_at--878--2731Chr03:3295838..3295862 (25 bp)
AAGAATGGGACAGGCCTCAGCTACC
LOC_Os03g06580
Os.11808.1.S1_at--1077--7051Chr03:3295887..3295911 (25 bp)
GTAACCTTCTGAACATCACCACAAT
LOC_Os03g06580
Os.11808.1.S1_at--354--6591Chr03:3296028..3296052 (25 bp)
GATTGCGCAAGCATAGGGCTCTCTC
LOC_Os03g06580
Os.11808.1.S1_at--1131--1751Chr03:3296084..3296108 (25 bp)
ACCGGGATCTGCTGGCATATCTAAC
LOC_Os03g06580
Os.11808.1.S1_at--363--3151Chr03:3296258..3296282 (25 bp)
AATTCTACTTCCCTTGCTGATTTTG
LOC_Os03g06580
Os.11808.1.S1_at--597--3871Chr03:3296274..3296298 (25 bp)
CTGATTTTGGGCTCACTGATGGTCT
LOC_Os03g06580
Os.11808.1.S1_at--910--5911Chr03:3296342..3296366 (25 bp)
GAGCTAGATTGTTTCTGCCACGGAC
LOC_Os03g06580
Os.11808.1.S1_at--192--5331Chr03:3296415..3296439 (25 bp)
GAAGTGTTGTCCAGTGTCCACGTTA
LOC_Os03g06580
Os.11808.1.S1_at--1074--9211Chr03:3296431..3296455 (25 bp)
TCCACGTTATGGTTCTTTTATTCTG
LOC_Os03g06580
Target Sequence 
TACCATTTCCATTTCATCTGTGATCTGATCATCAATTCACCATTGACTGTATAATTGTGTATGCATAGCCTGTCAATTAG
CTTACTGCGGTTCGGGAGGCACATGCAAGAATGGGACAGGCCTCAGCTACCACTGCGAGTGCAGTGAGGGTTTCAGTAAC
CTTCTGAACATCACCACAATGCCATGTTTTCAGAATTGTTCAATCGGTGCGGATTGCGCAAGCATAGGGCTCTCTCCATC
CTCAAACTCTTCCAGTTCTCCTGCACCACCGGGATCTGCTGGCATATCTAACANATGGGGCGATTTCACATAAAATTCTA
CTTCCCTTGCTGATTTTGGGCTCACTGATGGTCTGTCAGGCTATATAGATAGAGAATGGAGCATACGTAGTACATTTGAG
CTAGATTGTTTCTGCCACGGACAGGATAGANCAGTTAGCCTGTTAGAGATGTACACCTTTTGGGATGTTTGAAGTGTTGT
CCAGTGTCCACGTTATGGTTCTTTTATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis