Browse Element(s) Details


OsAffx.24995.1.S1_at

Description tigr:9631.m00588
TID=OsAffx.24995.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0660011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24995.1.S1_at--146--1931Chr03:3297143..3297167 (25 bp)
ACGGCGTCGAACTCCTCCTGTACGG
LOC_Os03g06600
OsAffx.24995.1.S1_at--386--8751Chr03:3297161..3297185 (25 bp)
TGTACGGCAGCATCCTCATCGGCCG
LOC_Os03g06600
OsAffx.24995.1.S1_at--1160--7671Chr03:3297203..3297227 (25 bp)
GGGTTCATGTATGGCCGCATCCCCA
LOC_Os03g06600
OsAffx.24995.1.S1_at--1034--6431Chr03:3297244..3297268 (25 bp)
GATCAGGGAGCGGTACACCCGGCCT
LOC_Os03g06600
OsAffx.24995.1.S1_at--907--4431Chr03:3297272..3297296 (25 bp)
GCCATTGCCGAGCAGGCCGTGTCAT
LOC_Os03g06600
OsAffx.24995.1.S1_at--1110--8411Chr03:3297286..3297537 (25 bp)
GGCCGTGTCATCGAATAAGCTAGCT
LOC_Os03g06600
OsAffx.24995.1.S1_at--473--4011Chr03:3297665..3297689 (25 bp)
CGTACTGCATGCAGGGCCAGGAGCT
LOC_Os03g06600
OsAffx.24995.1.S1_at--480--1051Chr03:3297708..3297732 (25 bp)
AGGTGTCAGTGGAGCCCGACGATCT
LOC_Os03g06600
OsAffx.24995.1.S1_at--545--1291Chr03:3297818..3297842 (25 bp)
AGATCCTGTCCCTTAGAGCTGAGAC
LOC_Os03g06600
OsAffx.24995.1.S1_at--807--4731Chr03:3297835..3297859 (25 bp)
GCTGAGACGGCGAAGTTTCTCGGAA
LOC_Os03g06600
OsAffx.24995.1.S1_at--721--8656Chr03:3297897..3297921 (25 bp)
TGTGGGTCCCACATATCGGTGGGCC
LOC_Os03g06600
Target Sequence 
ACGGCGTCGAACTCCTCCTGTACGGCAGCATCCTCATCGGCCGGTGCTGCTACTCATCCGGGGTTCATGTATGGCCGCAT
CCCCATCGCCCTCGCTCGCCAGATCAGGGAGCGGTACACCCGGCCTGGCGCCATTGCCGAGCAGGCCGTGTCATCGAATA
AGCTAGCTACCGGTGGTGCTGCTCGTGGTGGTGGTGGTGGTGGTATCTTTGTCGGCGCCACCACCGGCGGCCGTGTCCAG
TGCGCCGCTCATGGTGTGGGTGTGGACACGGACCGGATGGTGGCGTATTGCGGGTCGTACTGCATGCAGGGCCAGGAGCT
GGGAGCGCGCACCGCGGCAGGTGTCAGTGGAGCCCGACGATCTGGAGGAGTTCGACGCCGTGCAGCCGCAGCCGCTCCGG
CCCTCGCCCCTCCGCCGCCGCTCCGACCCTCACCGCCAACGCCGCTCCAGATCCTGTCCCTTAGAGCTGAGACGGCGAAG
TTTCTCGGAAGGAAGAGAAACAGAGAGAAGGATAGGGAAGGAGGAGCTGTGGGTCCCACATATCGGTGGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis