Browse Element(s) Details


Os.11808.2.S1_x_at

Description gb:NM_187768.1
DB_XREF= gi:34902621
GEN=OJ1607A12.16
TID=Os.11808.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11808 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1607A12.16), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0658011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g06550NANA3+3276212..3279503retrotransposon protein, putative, unclassified
LOC_Os03g06560NANA3+3280130..3286286retrotransposon protein, putative, unclassified
LOC_Os03g06570Os.27797.1.A1_at11/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.6794.1.S1_x_at2/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06570OsAffx.25518.1.S1_x_at1/113+3289562..3291678IQ calmodulin-binding motif family protein, expressed
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11808.2.S1_x_at--1111--8351Chr03:3294082..3294106 (25 bp)
GGCGGTCGTGCTGCTGCTAATCGTC
LOC_Os03g06580
Os.11808.2.S1_x_at--264--7311Chr03:3294089..3294113 (25 bp)
GTGCTGCTGCTAATCGTCGCGTCGA
LOC_Os03g06580
Os.11808.2.S1_x_at--931--9751Chr03:3294099..3294123 (25 bp)
TAATCGTCGCGTCGACGGTGGCCAC
LOC_Os03g06580
Os.11808.2.S1_x_at--15--9331Chr03:3294171..3294299 (25 bp)
TCGCCCCTGTAATCGGGTCGATGTG
LOC_Os03g06580
Os.11808.2.S1_x_at--484--9751Chr03:3294289..3294308 (20 bp)
TAATCGGGTCGATGTGCAAGACGGT
LOC_Os03g06580
Os.11808.2.S1_x_at--57--8191Chr03:3294380..3294404 (25 bp)
GGAAGCAGATGCACGTCGGCGACCA
LOC_Os03g06580
Os.11808.2.S1_x_at--68--7091Chr03:3294424..3294448 (25 bp)
GTCATCCCCAACTGTAAGGCTTCCG
LOC_Os03g06580
Os.11808.2.S1_x_at--925--3251Chr03:3294432..3294456 (25 bp)
CAACTGTAAGGCTTCCGCAGCTCGC
LOC_Os03g06580
Os.11808.2.S1_x_at--1158--10271Chr03:3294465..3294489 (25 bp)
TTTGCTGCTCTCACAATCTCACATG
LOC_Os03g06580
Os.11808.2.S1_x_at--1142--9691Chr03:3294475..3294499 (25 bp)
TCACAATCTCACATGCTCTGGCTTT
LOC_Os03g06580
Os.11808.2.S1_x_at--890--451Chr03:3294480..3294504 (25 bp)
ATCTCACATGCTCTGGCTTTCTGCG
LOC_Os03g06580
Target Sequence 
GGCGGTCGTGCTGCTGCTAATCGTCGCGTCGACGGTGGCCACCAGGGCGGCCGTCGCCGACGATTTCTTCTCCCCTCTCA
GCCCGCTCCTCGCCCCTGTAATCGGGTCGATGTGCAAGACGGTGGCGTGCGGGAAGGGGAACTGCACGGCGGCGTCGGGG
TTCCCGGGGTACAGGTGCGAGTGCGAGCCTGGGTGGAAGCAGATGCACGTCGGCGACCAGGCCAGCTTCCTGCCCTGCGT
CATCCCCAACTGTAAGGCTTCCGCAGCTCGCCTCTGCCCTTTGCTGCTCTCACAATCTCACATGCTCTGGCTTTCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11808.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis