Browse Element(s) Details


Os.2217.1.S1_a_at

Description gb:AF068332.1
DB_XREF= gi:3201968
TID=Os.2217.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2217 (NCBI UniGene Cluster)
DEF=Oryza sativa submergence induced protein 2A mRNA, complete cds.
PROD=submergence induced protein 2A
FL= gb:AK099497.1 gb:AK061653.1 gb:AF068332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0662010/111,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06580Os.11808.2.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.2.S1_x_at11/113+3293893..3296539expressed protein
LOC_Os03g06580Os.11808.1.S1_at11/113+3293893..3296539expressed protein
LOC_Os03g06600OsAffx.24995.1.S1_at11/113+3297008..3297951expressed protein
LOC_Os03g06610Os.31147.2.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.1.S1_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06610Os.31147.2.S1_x_at11/113+3302560..3303709allergen, putative, expressed
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed
LOC_Os03g06640NANA3+3326739..3330529expressed protein
LOC_Os03g06654Os.34206.1.S1_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06654Os.34206.2.S1_x_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2217.1.S1_a_at--663--1091Chr03:3319114..3319135 (22 bp)
AGTGGATACTTCGATGTCAGGGACC
LOC_Os03g06620
Os.2217.1.S1_a_at--1099--391Chr03:3319142..3319166 (25 bp)
ATCAGTGGATCCGTGTAGCAGTGAA
LOC_Os03g06620
Os.2217.1.S1_a_at--795--4992Chr04:6955328..6955399 (25 bp)
GCATGATTGTTTTGCCTGCGGGAAT
NONE
Os.2217.1.S1_a_at--350--10391Chr03:3319184..3319208 (25 bp)
TTTTGCCTGCGGGAATGTATCACCG
LOC_Os03g06620
Os.2217.1.S1_a_at--733--6891Chr03:3319200..3319224 (25 bp)
GTATCACCGCTTCACATTGGACAGT
LOC_Os03g06620
Os.2217.1.S1_a_at--492--8131NONE
GGACAGTGACAACTACATCAAGGCA
NONE
Os.2217.1.S1_a_at--360--3731Chr03:3319230..3319483 (25 bp)
CTACATCAAGGCAATGCGGCTCTTT
LOC_Os03g06620
Os.2217.1.S1_a_at--467--9551Chr03:3319479..3319503 (25 bp)
TCTTTGTGGGAGAGCCTGTCTGGAC
LOC_Os03g06620
Os.2217.1.S1_a_at--1046--5991Chr03:3319488..3319512 (25 bp)
GAGAGCCTGTCTGGACGCCGTACAA
LOC_Os03g06620
Os.2217.1.S1_a_at--798--4331Chr03:3319519..3319539 (21 bp)
CCATGACCATCTGCCAGCTAGAAAG
LOC_Os03g06620
Os.2217.1.S1_a_at--580--7711Chr03:3319662..3319686 (25 bp)
GGGTGGAACTCAAGCTGTCGAAGCT
LOC_Os03g06620
Target Sequence 
AGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCC
TGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCT
GGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACT
CAAGCTGTCGAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2217.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis