Browse Element(s) Details


Os.34206.1.S1_at

Description gb:AK072466.1
DB_XREF= gi:32982489
TID=Os.34206.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative flavin-containing monooxygenase (OJ1607A12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118H21, full insert sequence.
FL= gb:AK072466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0665411/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06620Os.2217.1.S1_a_at10/113+3317396..33203711,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, putative, expressed
LOC_Os03g06630Os.40021.1.S1_a_at11/113+3321365..3323659Heat shock factor protein 1, putative, expressed
LOC_Os03g06640NANA3+3326739..3330529expressed protein
LOC_Os03g06654Os.34206.1.S1_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06654Os.34206.2.S1_x_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06670Os.7611.1.S1_at10/113+3350486..3351457Histone H2A.Z, putative, expressed
LOC_Os03g06680Os.27254.1.S1_s_at11/113+3359295..3360847uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g06690OsAffx.12757.1.S1_at10/113+3363598..3364368hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34206.1.S1_at--1013--6911Chr03:3339059..3339083 (25 bp)
GTAGTCGTCCACAGGCCGGATCGAG
LOC_Os03g06654
Os.34206.1.S1_at--802--5751Chr03:3339097..3339121 (25 bp)
GACGGTGCATGCTGCGCTGTGCACA
LOC_Os03g06654
Os.34206.1.S1_at--56--4791Chr03:3339171..3339195 (25 bp)
GCTCGCATGCATGGCAACATGGCAT
LOC_Os03g06654
Os.34206.1.S1_at--123--8471Chr03:3339205..3339229 (25 bp)
TGGCCGGAGTCGCATGCATTGCAAA
LOC_Os03g06654
Os.34206.1.S1_at--767--10731Chr03:3339223..3339247 (25 bp)
TTGCAAATATTCCACAGCTCGCGAG
LOC_Os03g06654
Os.34206.1.S1_at--450--4831Chr03:3339247..3339271 (25 bp)
GCTCACATCTGTTGCTAGCTAGCGA
LOC_Os03g06654
Os.34206.1.S1_at--892--991Chr03:3339439..3339463 (25 bp)
AGGATGTTGCTTGTCTGATGCGCCC
LOC_Os03g06654
Os.34206.1.S1_at--149--9171Chr03:3339457..3339481 (25 bp)
TGCGCCCCATGCAATGCAGATACGG
LOC_Os03g06654
Os.34206.1.S1_at--322--3931Chr03:3339479..3339503 (25 bp)
CGGCTGAAAGAGTGCAGTCGTTTTT
LOC_Os03g06654
Os.34206.1.S1_at--234--371Chr03:3339513..3339537 (25 bp)
ATAATTTTGGTCCAGGGCTGCAGGC
LOC_Os03g06654
Os.34206.1.S1_at--662--3491Chr03:3339533..3339557 (25 bp)
CAGGCCGTGATGATGTCTGCATTAC
LOC_Os03g06654
Target Sequence 
GTAGTCGTCCACAGGCCGGATCGAGGACGGACGGGACGGACGGTGCATGCTGCGCTGTGCACACAGGCTCAGCTACCTCA
GCTGCTGCTGCTGCTGCTGCTGATGGCCTCTCGCTCGCATGCATGGCAACATGGCATAGGTAGCCATGGCCGGAGTCGCA
TGCATTGCAAATATTCCACAGCTCGCGAGCTCACATCTGTTGCTAGCTAGCGAGCAGCAGCGGCCGGCTGGTGACCAGCG
ATGGCGCTGGTGACCAGCAGCAGCGAGCAGATGCACAGAGATCATATGTAGTCGATGCATGGGAGAGGAGGAGGAGGAGG
AGGAGGGGTGTGTGTGTACGTGTATGTGCAGTGCAGGTGGGTTGTGACAAAGTTTTGCATAGGATGTTGCTTGTCTGATG
CGCCCCATGCAATGCAGATACGGCTGAAAGAGTGCAGTCGTTTTTTTTGTTTTTATAATTTTGGTCCAGGGCTGCAGGCC
GTGATGATGTCTGCATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis