Browse Element(s) Details


OsAffx.12757.1.S1_at

Description tigr:9631.m00597
TID=OsAffx.12757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0669010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06654Os.34206.1.S1_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06654Os.34206.2.S1_x_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06670Os.7611.1.S1_at10/113+3350486..3351457Histone H2A.Z, putative, expressed
LOC_Os03g06680Os.27254.1.S1_s_at11/113+3359295..3360847uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g06690OsAffx.12757.1.S1_at10/113+3363598..3364368hypothetical protein
LOC_Os03g06700Os.11154.2.S1_x_at7/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06700Os.11154.1.S1_a_at5/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12757.1.S1_at--1054--8831Chr03:3364041..3364065 (25 bp)
TGATCAACAGATACCCTTCATAGTT
LOC_Os03g06690
OsAffx.12757.1.S1_at--712--1251Chr03:3364049..3364073 (25 bp)
AGATACCCTTCATAGTTCAGGCATA
LOC_Os03g06690
OsAffx.12757.1.S1_at--948--1211Chr03:3364062..3364086 (25 bp)
AGTTCAGGCATACTACACCAATACT
LOC_Os03g06690
OsAffx.12757.1.S1_at--1103--9891Chr03:3364072..3364096 (25 bp)
TACTACACCAATACTGCTAAGAGAG
LOC_Os03g06690
OsAffx.12757.1.S1_at--569--331Chr03:3364098..3364122 (25 bp)
ATACAACTACAGACCAACAGTACGT
LOC_Os03g06690
OsAffx.12757.1.S1_at--964--5831Chr03:3364109..3364133 (25 bp)
GACCAACAGTACGTAATACTACTAG
LOC_Os03g06690
OsAffx.12757.1.S1_at--439--331Chr03:3364124..3364148 (25 bp)
ATACTACTAGTGTAGCTGCCGTAGA
LOC_Os03g06690
OsAffx.12757.1.S1_at--696--7431Chr03:3364133..3364157 (25 bp)
GTGTAGCTGCCGTAGAAGATCAGAT
LOC_Os03g06690
OsAffx.12757.1.S1_at--777--5351Chr03:3364147..3364171 (25 bp)
GAAGATCAGATGCTTCCATTATTCC
LOC_Os03g06690
OsAffx.12757.1.S1_at--847--9231Chr03:3364161..3364185 (25 bp)
TCCATTATTCCTGACAGTTGAACAG
LOC_Os03g06690
OsAffx.12757.1.S1_at--165--5371NONE
GAAGAGCCTATTCTCTGAACCAGAT
NONE
Target Sequence 
TGATCAACAGATACCCTTCATAGTTCAGGCATACTACACCAATACTGCTAAGAGAGAATACAACTACAGACCAACAGTAC
GTAATACTACTAGTGTAGCTGCCGTAGAAGATCAGATGCTTCCATTATTCCTGACAGTTGAACAGAAAAGAAGAGCCTAT
TCTCTGAACCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis