Browse Element(s) Details


Os.11154.1.S1_a_at

Description gb:AK064127.1
DB_XREF= gi:32974145
TID=Os.11154.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative fatty acid elongase (OJ1607A12.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E01, full insert sequence.
FL= gb:AK064127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g067005/11Fatty acid elongase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06680Os.27254.1.S1_s_at11/113+3359295..3360847uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g06690OsAffx.12757.1.S1_at10/113+3363598..3364368hypothetical protein
LOC_Os03g06700Os.11154.2.S1_x_at7/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06700Os.11154.1.S1_a_at5/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11154.1.S1_a_at--589--1871Chr03:3385767..3385791 (25 bp)
ACGAGCTGTCCTACTGCGAGGCGAA
LOC_Os03g06700
Os.11154.1.S1_a_at--74--3891Chr03:3385772..3385796 (25 bp)
CTGTCCTACTGCGAGGCGAAAGGGA
LOC_Os03g06700
Os.11154.1.S1_a_at--1041--8491Chr03:3385865..3385889 (25 bp)
TGGAAGGCGCTCAGGACGGTCGACG
LOC_Os03g06700
Os.11154.1.S1_a_at--780--4131Chr03:3385935..3385959 (25 bp)
CGCTGCCGGTGCACGTGCCCAAGGT
LOC_Os03g06700
Os.11154.1.S1_a_at--358--8351Chr03:3386020..3386044 (25 bp)
GGCGTCGCACGTACGACCGGAATAA
LOC_Os03g06700
Os.11154.1.S1_a_at--79--6991Chr03:3386030..3386054 (25 bp)
GTACGACCGGAATAAGCTACATACT
NONE
Os.11154.1.S1_a_at--1068--311Chr03:3386050..3386074 (25 bp)
ATACTTAATTATGTGTACTTGCGTG
NONE
Os.11154.1.S1_a_at--805--771Chr03:3386060..3386084 (25 bp)
ATGTGTACTTGCGTGTAAATCGTCA
NONE
Os.11154.1.S1_a_at--767--2271Chr03:3386076..3386100 (25 bp)
AAATCGTCACGAGTCATGGATGGAC
NONE
Os.11154.1.S1_a_at--337--6231Chr03:3386094..3386118 (25 bp)
GATGGACTGAAAAATACTGTCGCGT
NONE
Os.11154.1.S1_a_at--711--5531Chr03:3386102..3386126 (25 bp)
GAAAAATACTGTCGCGTGTTGTTTC
NONE
Target Sequence 
ACGAGCTGTCCTACTGCGAGGCGAAAGGGAGGATCAGGCGCGGCGACCGGGTGTGGCAGATCGCGTTCGGCTCCGGATTC
AAGTGCNANAGCGCCGTCTGGAAGGCGCTCAGGACGGTCGACGGCGGCGCCGGCCGGGACGCCGGCGCGTGGGCGCAGGA
CATCGACGCGCTGCCGGTGCACGTGCCCAAGGTGGTGCCCATCGTCGACGACGACGACGGCGCCAATGGCGGCGACGGCG
ACCGACACGACGCGGCGTCGCACGTACGACCGGAATAAGCTACATACTTAATTATGTGTACTTGCGTGTAAATCGTCACG
AGTCATGGATGGACTGAAAAATACTGTCGCGTGTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11154.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis