Browse Element(s) Details


Os.9134.1.S1_at

Description gb:AK103418.1
DB_XREF= gi:32988627
TID=Os.9134.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative glutathione reductase (NADPH) (OJ1123F12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128J11, full insert sequence.
FL= gb:AK103418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0674010/11Glutathione reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06700Os.11154.2.S1_x_at7/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06700Os.11154.1.S1_a_at5/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006749biological_processglutathione metabolism
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004362molecular_functionglutathione-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9134.1.S1_at--336--4951Chr03:3410304..3410328 (25 bp)
GCATTCACCCAACATCTGCAGAGGA
LOC_Os03g06740
Os.9134.1.S1_at--445--8011NONE
GGAGGCATTCTCAGAGGGACTTCTC
NONE
Os.9134.1.S1_at--736--6131Chr03:3411005..3411029 (25 bp)
GAGGGACTTCTCTACTTCCGAGCAG
LOC_Os03g06740
Os.9134.1.S1_at--708--10351Chr03:3411056..3411080 (25 bp)
TTTTTGTAGCGGTATCCACGGAAAG
LOC_Os03g06740
Os.9134.1.S1_at--167--8191Chr03:3411094..3411118 (25 bp)
GGAAGCCAGCAAACTTGTATCATAG
LOC_Os03g06740
Os.9134.1.S1_at--142--311Chr03:3411115..3411139 (25 bp)
ATAGCGCTGACTGGCATTCTCTGAT
LOC_Os03g06740
Os.9134.1.S1_at--284--9471Chr03:3411134..3411158 (25 bp)
TCTGATCCCCTTTTTGCATCTATTG
LOC_Os03g06740
Os.9134.1.S1_at--720--7751Chr03:3411171..3411195 (25 bp)
GGTGATACACTATTAGCTGCTGTTT
LOC_Os03g06740
Os.9134.1.S1_at--14--4731Chr03:3411189..3411213 (25 bp)
GCTGTTTTCCTTCTCTTGGTTGAAA
LOC_Os03g06740
Os.9134.1.S1_at--704--7311Chr03:3411217..3411241 (25 bp)
GTGCTGCACCATGTGAGTACCACAG
LOC_Os03g06740
Os.9134.1.S1_at--1035--9591Chr03:3411313..3411337 (25 bp)
TCATATCTGTGCTAGCATTTCCTAA
LOC_Os03g06740
Target Sequence 
GCATTCACCCAACATCTGCAGAGGAATTTGTCACAATGAGAAATGCAACTAGANAAAGTTCGGAGAAGCACAACAGATGA
GGTAGAATCTAAAGATNAAGGTTGTTACNTCNAGAACTAGTACAGATAGGAGGCATTCTCAGAGGGACTTCTCTACTTCC
GAGCAGCTNGATTTACACTGGGCGGACNANTTTTTTTTTGTAGCGGTATCCACGGAAAGGAAACCCATGACAGGAAGCCA
GCAAACTTGTATCATAGCGCTGACTGGCATTCTCTGATCCCCTTTTTGCATCTATTGTAGCTTGAACACGGTGATACACT
ATTAGCTGCTGTTTTCCTTCTCTTGGTTGAAATAAGTGCTGCACCATGTGAGTACCACAGCCTGGAAATTTTGTAAGAAA
AAAAAGAAATATTATTTTGGTAGTACAACTCAGCCTAATCTGAATTTTACATCATATCTGTGCTAGCATTTCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis