Browse Element(s) Details


OsAffx.24996.1.S1_at

Description tigr:9631.m00603
TID=OsAffx.24996.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0675011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24996.1.S1_at--893--9751Chr03:3412696..3412720 (25 bp)
TAATCCTCCATTCCAGCATGAGCAT
LOC_Os03g06750
OsAffx.24996.1.S1_at--229--6251Chr03:3412647..3412671 (25 bp)
GATGGGCGAACTATCTTTGTCAGCA
LOC_Os03g06750
OsAffx.24996.1.S1_at--948--10251Chr03:3412632..3412656 (25 bp)
TTTGTCAGCATTGGCGGTGAGTCCT
LOC_Os03g06750
OsAffx.24996.1.S1_at--208--9191Chr03:3412606..3412630 (25 bp)
TGCCACCTTTAGCTTTGACACAGCG
LOC_Os03g06750
OsAffx.24996.1.S1_at--1001--10471Chr03:3412513..3412537 (25 bp)
TTACTTCATCGCTGAGTTGGACGCC
LOC_Os03g06750
OsAffx.24996.1.S1_at--196--3371Chr03:3412456..3412480 (25 bp)
CACCAGTTGGCGCATATGCTCAATG
LOC_Os03g06750
OsAffx.24996.1.S1_at--778--8171Chr03:3412378..3412402 (25 bp)
GGAACTAGCTACTACTGTGTCTGAT
LOC_Os03g06750
OsAffx.24996.1.S1_at--672--411Chr03:3412355..3412379 (25 bp)
ATCATGAGTTGGTCACGGGTGTCAC
LOC_Os03g06750
OsAffx.24996.1.S1_at--534--5131Chr03:3412307..3412331 (25 bp)
GCAAATTCTGCGTCGTGGAGTGCTG
LOC_Os03g06750
OsAffx.24996.1.S1_at--490--7151Chr03:3412269..3412293 (25 bp)
GTCTCGGTGCCGTTTATTCAATTGG
LOC_Os03g06750
OsAffx.24996.1.S1_at--201--8231Chr03:3412200..3412224 (25 bp)
GGCAATAGCCGCCAATTTCGAGAGT
LOC_Os03g06750
Target Sequence 
TAATCCTCCATTCCAGCATGAGCATGTCACCTCCTACGCTGTGCACAGGGATGGGCGAACTATCTTTGTCAGCATTGGCG
GTGAGTCCTCTGCCACCTTTAGCTTTGACACAGCGGAGTCTGTGAGGAATGGTTGTATGTGGAAGAACCATGGCCAGTGG
CAGCTGCCGTTCTCCGGTCGTGCTTACTTCATCGCTGAGTTGGACGCCTGGGTTGGGCTCAGCAGAAAACCTGGCACCAC
CACCAGTTGGCGCATATGCTCAATGGATGTGATATCTGACGATTGCGAGAATGGCCAGGCGGTGAAATACACCAGGGAGG
AACTAGCTACTACTGTGTCTGATCATGAGTTGGTCACGGGTGTCACCCTCGTTAGCATGGGTGGTGGAAGCAAATTCTGC
GTCGTGGAGTGCTGCCTGGATCACTCAGTCTCGGTGCCGTTTATTCAATTGGTGACATTTTCTATGATGTATGGTAAGAA
TGGAGAACTTACGACTGGCAATAGCCGCCAATTTCGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis