Browse Element(s) Details


Os.34216.1.S1_x_at

Description gb:AK067219.1
DB_XREF= gi:32977237
TID=Os.34216.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1123F12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098I02, full insert sequence.
FL= gb:AK067219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0676011/11exocyst complex component Sec15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein
LOC_Os03g06800OsAffx.22252.1.S1_x_at11/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22252.2.S1_x_at4/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.22251.1.S1_x_at2/113+3431853..3432119hypothetical protein
LOC_Os03g06800OsAffx.12758.1.S1_x_at1/113+3431853..3432119hypothetical protein
LOC_Os03g06810OsAffx.12758.1.S1_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.12758.1.S1_x_at11/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.2.S1_x_at4/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22251.1.S1_x_at3/113+3433880..3434470expressed protein
LOC_Os03g06810OsAffx.22252.1.S1_x_at1/113+3433880..3434470expressed protein
LOC_Os03g06820OsAffx.3155.1.S1_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06820OsAffx.3155.1.S1_x_at11/113+3437819..3438052hypothetical protein
LOC_Os03g06830OsAffx.24997.1.S1_at11/113+3441932..3442201hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34216.1.S1_x_at--732--7771Chr03:3417887..3417911 (25 bp)
GGTGCAATGAGCCACATCTCGGACT
LOC_Os03g06760
Os.34216.1.S1_x_at--803--3951Chr03:3417906..3417930 (25 bp)
CGGACTCTATCATGACAACACTTCT
LOC_Os03g06760
Os.34216.1.S1_x_at--987--6771Chr03:3417965..3417989 (25 bp)
GTTATGGGCCTTGACATTGACTTGA
LOC_Os03g06760
Os.34216.1.S1_x_at--657--3131Chr03:3417990..3418014 (25 bp)
AATTACTGGAGGCATTCGCGGAAGA
LOC_Os03g06760
Os.34216.1.S1_x_at--614--2071Chr03:3418058..3418082 (25 bp)
ACATTCGCCGATTGTTTGGTTGAAA
LOC_Os03g06760
Os.34216.1.S1_x_at--670--351Chr03:3418082..3418106 (25 bp)
ATAAGGCAGCTAGTCAATCTCCTCC
LOC_Os03g06760
Os.34216.1.S1_x_at--696--10011Chr03:3418108..3418132 (25 bp)
TAGCAGCCAGCCAGAGAATTTCATG
LOC_Os03g06760
Os.34216.1.S1_x_at--1090--2731Chr03:3418175..3418199 (25 bp)
AAGAAGGTTGCCATCGTTTGTGACA
LOC_Os03g06760
Os.34216.1.S1_x_at--15--8511Chr03:3418228..3418252 (25 bp)
TGGAAGCCTTTCAAACCGCAACAAG
LOC_Os03g06760
Os.34216.1.S1_x_at--992--71Chr03:3418351..3418375 (25 bp)
ATTGCGCTGCTGAAAATGTCCTTTG
LOC_Os03g06760
Os.34216.1.S1_x_at--269--5551Chr03:3418376..3418400 (25 bp)
GAAACTGCCAGTGTCAGACCTTCCA
LOC_Os03g06760
Target Sequence 
GGTGCAATGAGCCACATCTCGGACTCTATCATGACAACACTTCTTAACGAAGGCGTGAAAAGGTTCACTGTCAATGCAGT
TATGGGCCTTGACATTGACTTGAAATTACTGGAGGCATTCGCGGAAGAGAAATTTTATAGGACCGGTTTGGTGGATTTGG
GTAAGGAAACAACATTCGCCGATTGTTTGGTTGAAATAAGGCAGCTAGTCAATCTCCTCCTTAGCAGCCAGCCAGAGAAT
TTCATGAATCCAGTGATAAGGGGGAGGAACTATGGGTCATTAGACTACAAGAAGGTTGCCATCGTTTGTGACAAGTACAA
GGATTTTGCAGATGGGTTGTTTGGAAGCCTTTCAAACCGCAACAAGCAGGATGCTCGCAAGAGGTCCATGGATGTTCTGA
AGAGAAGGCTGAAGGATTTTAGCTGATTAAGGTTAGGAATGTTTGCCTTTGTAAATAAATTGTCATTGCGCTGCTGAAAA
TGTCCTTTGGAAACTGCCAGTGTCAGACCTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34216.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis