Browse Element(s) Details


Os.7378.1.S1_at

Description gb:AK065571.1
DB_XREF= gi:32975589
TID=Os.7378.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026K16, full insert sequence.
FL= gb:AK065571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0672011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06700Os.11154.2.S1_x_at7/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06700Os.11154.1.S1_a_at5/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed
LOC_Os03g06770OsAffx.22251.1.S1_x_at5/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.12758.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.1.S1_x_at2/113+3422940..3424117hypothetical protein
LOC_Os03g06770OsAffx.22252.2.S1_x_at1/113+3422940..3424117hypothetical protein
LOC_Os03g06780OsAffx.22252.2.S1_x_at11/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22251.1.S1_x_at7/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.22252.1.S1_x_at3/113+3426110..3426364hypothetical protein
LOC_Os03g06780OsAffx.12758.1.S1_x_at2/113+3426110..3426364hypothetical protein
LOC_Os03g06790OsAffx.22251.1.S1_x_at11/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.1.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.22252.2.S1_x_at4/113+3428614..3428835hypothetical protein
LOC_Os03g06790OsAffx.12758.1.S1_x_at2/113+3428614..3428835hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7378.1.S1_at--746--471Chr03:3403611..3403635 (25 bp)
ATCTGAGTTTGAAGGTGAACAGCCA
LOC_Os03g06720
Os.7378.1.S1_at--9--7731Chr03:3403644..3403668 (25 bp)
GGGTGGAGACACTTCCACATAAAAT
LOC_Os03g06720
Os.7378.1.S1_at--614--10671Chr03:3403656..3403680 (25 bp)
TTCCACATAAAATTTCCAGCTTGAT
LOC_Os03g06720
Os.7378.1.S1_at--476--1551Chr03:3403673..3403697 (25 bp)
AGCTTGATGTTCTGCTGAAATTTCA
LOC_Os03g06720
Os.7378.1.S1_at--67--6311Chr03:3403715..3403739 (25 bp)
GATGAGGTCTTGTATCACGTTAGAT
LOC_Os03g06720
Os.7378.1.S1_at--480--7811Chr03:3403720..3403744 (25 bp)
GGTCTTGTATCACGTTAGATGTTAA
LOC_Os03g06720
Os.7378.1.S1_at--367--1311Chr03:3403736..3403760 (25 bp)
AGATGTTAATCATTCTTTCCCCTGG
LOC_Os03g06720
Os.7378.1.S1_at--916--251Chr03:3403813..3403837 (25 bp)
ATATGCCTTAATAGCTGTAGAACCT
LOC_Os03g06720
Os.7378.1.S1_at--1057--4731Chr03:3403826..3403850 (25 bp)
GCTGTAGAACCTTTTGAGCTTTTCT
LOC_Os03g06720
Os.7378.1.S1_at--116--10391Chr03:3403845..3403869 (25 bp)
TTTTCTTTTATTTATCTGCAGCTAA
LOC_Os03g06720
Os.7378.1.S1_at--128--4851Chr03:3403865..3403889 (25 bp)
GCTAAACTGCAGAATCTTTTCTGTT
LOC_Os03g06720
Target Sequence 
ATCTGAGTTTGAAGGTGAACAGCCANGTTGTAAGGGGTGGAGACACTTCCACATAAAATTTCCAGCTTGATGTTCTGCTG
AAATTTCANGTAGCTTCATCTATTATGATGAGGTCTTGTATCACGTTAGATGTTAATCATTCTTTCCCCTGGGTTCAAAG
GGAAATAAAAAAAAAGTCATAAAGGCCANTTTAGTAAAATATCATATATGCCTTAATAGCTGTAGAACCTTTTGAGCTTT
TCTTTTATTTATCTGCAGCTAAACTGCAGAATCTTTTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis