Browse Element(s) Details


Os.27254.1.S1_s_at

Description gb:AK064886.1
DB_XREF= gi:32974904
TID=Os.27254.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1607A12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K11, full insert sequence.
FL= gb:AK064886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0668011/11uncharacterized plant-specific domain TIGR01615 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06654Os.34206.1.S1_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06654Os.34206.2.S1_x_at11/113+3334152..3339559Flavin-binding monooxygenase-like family protein, expressed
LOC_Os03g06670Os.7611.1.S1_at10/113+3350486..3351457Histone H2A.Z, putative, expressed
LOC_Os03g06680Os.27254.1.S1_s_at11/113+3359295..3360847uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g06690OsAffx.12757.1.S1_at10/113+3363598..3364368hypothetical protein
LOC_Os03g06700Os.11154.2.S1_x_at7/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06700Os.11154.1.S1_a_at5/113+3381850..3386044Fatty acid elongase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27254.1.S1_s_at--475--8531Chr03:3360514..3360538 (25 bp)
TGGAGCGTGGACTCAATGATTGATG
LOC_Os03g06680
Os.27254.1.S1_s_at--710--6291Chr03:3360535..3360559 (25 bp)
GATGATCAAGGACTCGTCTTTTGTT
LOC_Os03g06680
Os.27254.1.S1_s_at--353--8831Chr03:3360559..3360583 (25 bp)
TGATTCTTTTTTCTTCGGGAATTTG
LOC_Os03g06680
Os.27254.1.S1_s_at--145--10571Chr03:3360569..3360593 (25 bp)
TTCTTCGGGAATTTGCATTTGCAGC
LOC_Os03g06680
Os.27254.1.S1_s_at--963--10271Chr03:3360580..3360604 (25 bp)
TTTGCATTTGCAGCGTCATCTTGGG
LOC_Os03g06680
Os.27254.1.S1_s_at--443--3391Chr03:3360590..3360614 (25 bp)
CAGCGTCATCTTGGGCTGGATGCAA
LOC_Os03g06680
Os.27254.1.S1_s_at--28--8351Chr03:3360603..3360627 (25 bp)
GGCTGGATGCAAATGTTTTATTCTT
LOC_Os03g06680
Os.27254.1.S1_s_at--1109--10311Chr03:3360673..3360697 (25 bp)
TTTCATTTTGGCCATGGAGTAGTAG
LOC_Os03g06680
Os.27254.1.S1_s_at--173--7051Chr03:3360697..3360721 (25 bp)
GTAACTGTAGTAGTAAGCACGGATA
LOC_Os03g06680
Os.27254.1.S1_s_at--733--1491Chr03:3360712..3360736 (25 bp)
AGCACGGATAAGACGAACGGGAACA
LOC_Os03g06680
Os.27254.1.S1_s_at--777--7931Chr03:3360781..3360805 (25 bp)
GGATTACGGCAATATCTACTTCTTT
LOC_Os03g06680
Target Sequence 
TGGAGCGTGGACTCAATGATTGATGATCAAGGACTCGTCTTTTGTTGATTCTTTTTTCTTCGGGAATTTGCATTTGCAGC
GTCATCTTGGGCTGGATGCAAATGTTTTATTCTTTCTTTTCCTTTCCTTTTTCCCCCTTCATTTTTACCCTTTAATGGGT
TTCATTTTGGCCATGGAGTAGTAGTAACTGTAGTAGTAAGCACGGATAAGACGAACGGGAACAAAAAAAATGTAGTGTTA
GTTGAACAGAAAAAAAAGAGAGATAATGGATTACGGCAATATCTACTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27254.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis