Browse Element(s) Details


OsAffx.12755.1.S1_at

Description tigr:9631.m00578
TID=OsAffx.12755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Viral A-type inclusion protein repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0651011/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06460OsAffx.3149.1.S1_at11/113+3209011..3213787Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os03g06470OsAffx.12753.1.S1_at11/113+3217583..3218031hypothetical protein
LOC_Os03g06480OsAffx.24369.11.S1_s_at11/113+3220844..3221853expressed protein
LOC_Os03g06490Os.5567.1.S1_at11/113+3232098..3236966expressed protein
LOC_Os03g06510OsAffx.12755.1.S1_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06510Os.8719.1.A1_s_at11/113+3237548..3249707Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os03g06520Os.10754.1.S1_at10/113+3250261..3255989Sulfate transporter 3.1, putative, expressed
LOC_Os03g06530OsAffx.24994.2.S1_s_at11/113+3267653..3268189hypothetical protein
LOC_Os03g06540OsAffx.10048.1.S1_x_at11/113+3269190..3273536retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12755.1.S1_at--654--3411Chr03:3249549..3249573 (25 bp)
CAGAACGTGATGCTCTTAGGATCTC
LOC_Os03g06510
OsAffx.12755.1.S1_at--875--5451Chr03:3249551..3249575 (25 bp)
GAACGTGATGCTCTTAGGATCTCTT
LOC_Os03g06510
OsAffx.12755.1.S1_at--450--1911Chr03:3249553..3249577 (25 bp)
ACGTGATGCTCTTAGGATCTCTTCT
LOC_Os03g06510
OsAffx.12755.1.S1_at--1023--7391Chr03:3249555..3249579 (25 bp)
GTGATGCTCTTAGGATCTCTTCTGA
LOC_Os03g06510
OsAffx.12755.1.S1_at--960--6331Chr03:3249557..3249581 (25 bp)
GATGCTCTTAGGATCTCTTCTGAGA
LOC_Os03g06510
OsAffx.12755.1.S1_at--280--631Chr03:3249558..3249582 (25 bp)
ATGCTCTTAGGATCTCTTCTGAGAT
LOC_Os03g06510
OsAffx.12755.1.S1_at--599--4811Chr03:3249560..3249584 (25 bp)
GCTCTTAGGATCTCTTCTGAGATGA
LOC_Os03g06510
OsAffx.12755.1.S1_at--231--10091Chr03:3249565..3249589 (25 bp)
TAGGATCTCTTCTGAGATGAGTAAC
LOC_Os03g06510
OsAffx.12755.1.S1_at--614--451Chr03:3249569..3249593 (25 bp)
ATCTCTTCTGAGATGAGTAACACTA
LOC_Os03g06510
OsAffx.12755.1.S1_at--528--9571Chr03:3249572..3249596 (25 bp)
TCTTCTGAGATGAGTAACACTATGA
LOC_Os03g06510
OsAffx.12755.1.S1_at--29--3871Chr03:3249576..3249600 (25 bp)
CTGAGATGAGTAACACTATGATATT
LOC_Os03g06510
Target Sequence 
CAGAACGTGATGCTCTTAGGATCTCTTCTGAGATGAGTAACACTATGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis