Browse Element(s) Details


OsAffx.25649.1.S1_at

Description tigr:9631.m04857
TID=OsAffx.25649.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4978011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed
LOC_Os03g49770Os.6670.1.S1_at11/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49770Os.57422.1.S1_x_at10/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49780OsAffx.25649.1.S1_at11/113+28292772..28293512hypothetical protein
LOC_Os03g49790OsAffx.25844.2.S1_at1/113+28294606..28295892Pattern formation protein EMB30, putative, expressed
LOC_Os03g49800Os.22464.1.S1_at11/113+28307285..28311784Phosphatidylinositol-4-phosphate 5-kinase 1, putative, expressed
LOC_Os03g49810OsAffx.13426.1.S1_at9/113+28313027..28314013hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25649.1.S1_at--293--9311Chr03:28292999..28293023 (25 bp)
TCCCCTCGGGCTGTCGGATCTAGAG
LOC_Os03g49780
OsAffx.25649.1.S1_at--322--891Chr03:28293057..28293081 (25 bp)
AGGCCTTTCTGCTCGACAACGGCTT
LOC_Os03g49780
OsAffx.25649.1.S1_at--767--5611Chr03:28293071..28293095 (25 bp)
GACAACGGCTTTGCGACAACGAGGC
LOC_Os03g49780
OsAffx.25649.1.S1_at--253--10291Chr03:28293080..28293104 (25 bp)
TTTGCGACAACGAGGCGATAGCGGC
LOC_Os03g49780
OsAffx.25649.1.S1_at--864--6131Chr03:28293116..28293140 (25 bp)
GAGGTGGCAAGTGACATCGACAACA
LOC_Os03g49780
OsAffx.25649.1.S1_at--739--7691Chr03:28293224..28293248 (25 bp)
GGGTACGAACTTGCGATTTGTCCGT
LOC_Os03g49780
OsAffx.25649.1.S1_at--40--6531Chr03:28293238..28293262 (25 bp)
GATTTGTCCGTGTCACTGCGATGCT
LOC_Os03g49780
OsAffx.25649.1.S1_at--742--4351Chr03:28293289..28293313 (25 bp)
CCAGACGATGTCAGCCGCGGCAGGT
LOC_Os03g49780
OsAffx.25649.1.S1_at--9--7511Chr03:28293315..28293339 (25 bp)
GTGGTCCAGACGTCGGTGGCACTCT
LOC_Os03g49780
OsAffx.25649.1.S1_at--670--9431Chr03:28293327..28293351 (25 bp)
TCGGTGGCACTCTCGTGGCCAGTGT
LOC_Os03g49780
OsAffx.25649.1.S1_at--424--6911Chr03:28293430..28293454 (25 bp)
GTAGTGGTGGGATCCACCTTTGGCT
LOC_Os03g49780
Target Sequence 
TCCCCTCGGGCTGTCGGATCTAGAGGCCGCCGCCGGCCTTGCCAACCTCGCACTGCTCAGGCCTTTCTGCTCGACAACGG
CTTTGCGACAACGAGGCGATAGCGGCGGACAAGGTGGGAGGTGGCAAGTGACATCGACAACAGCTTTGGGGATGGAGCTC
TGGGCGGGGATGGCGCAAAGGCTAGTGACAGCGGCGGCGGCTCACGACGACGACGACCTCGATCGGGGTACGAACTTGCG
ATTTGTCCGTGTCACTGCGATGCTCGGCGGTGGTGGCGGCGGATGGTGGCCCAGACGATGTCAGCCGCGGCAGGTGGTGG
TCCAGACGTCGGTGGCACTCTCGTGGCCAGTGTGCCCTCCAGTTCGCCCCCGGCCGATGCGCTCAAGTTGTTGGTGGGTG
GTTGGCAGAGAGAGGAAGGATGGGACTAGGAGTAGTGGTGGGATCCACCTTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis