Browse Element(s) Details


OsAffx.25660.1.S1_at

Description tigr:9631.m04942
TID=OsAffx.25660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5059011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50560Os.5959.1.S1_at11/113+28818239..28822369RRM-containing protein, putative, expressed
LOC_Os03g50570OsAffx.13444.1.S1_at10/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.19786.1.S1_at3/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32242.1.S1_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.32330.1.S1_x_at2/113+28824751..28830027expressed protein
LOC_Os03g50570OsAffx.23830.1.S1_at1/113+28824751..28830027expressed protein
LOC_Os03g50570Os.29056.1.S1_s_at1/113+28824751..28830027expressed protein
LOC_Os03g50580NANA3+28831688..28832032expressed protein
LOC_Os03g50590OsAffx.25660.1.S1_at11/113+28839634..28840107expressed protein
LOC_Os03g50600NANA3+28845225..28845605hypothetical protein
LOC_Os03g50610NANA3+28849197..28849529hypothetical protein
LOC_Os03g50620Os.11878.1.S1_at6/113+28850247..28856094expressed protein
LOC_Os03g50630OsAffx.3566.1.S1_at11/113+28862590..28862880hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25660.1.S1_at--506--9351Chr03:28839667..28839691 (25 bp)
TCGCTCTGTTTCTTCTTGCTCATGT
LOC_Os03g50590
OsAffx.25660.1.S1_at--658--10711Chr03:28839682..28839706 (25 bp)
TTGCTCATGTCTCTCCTTGTCCATA
LOC_Os03g50590
OsAffx.25660.1.S1_at--551--10811Chr03:28839698..28839722 (25 bp)
TTGTCCATAGCTCGCATGGCGCACG
LOC_Os03g50590
OsAffx.25660.1.S1_at--309--7171Chr03:28839726..28839750 (25 bp)
GTCTCCACGCGAGCTTCAGGGATGG
LOC_Os03g50590
OsAffx.25660.1.S1_at--701--3351Chr03:28839731..28839755 (25 bp)
CACGCGAGCTTCAGGGATGGTTTGC
LOC_Os03g50590
OsAffx.25660.1.S1_at--16--9611Chr03:28839769..28839793 (25 bp)
TCATCGTCCGCGGAGAAGCAGTTGG
LOC_Os03g50590
OsAffx.25660.1.S1_at--1086--2711Chr03:28839784..28839808 (25 bp)
AAGCAGTTGGTGGATCCACGGATCA
LOC_Os03g50590
OsAffx.25660.1.S1_at--898--8551Chr03:28839794..28839818 (25 bp)
TGGATCCACGGATCATCGCCGCTGG
LOC_Os03g50590
OsAffx.25660.1.S1_at--664--1531Chr03:28839822..28839846 (25 bp)
AGCAGGCCGTGTCGCGGATGTCGTC
LOC_Os03g50590
OsAffx.25660.1.S1_at--1039--8111Chr03:28840038..28840062 (25 bp)
GGACGGCACTGGTCCTTCTTGCCAT
LOC_Os03g50590
OsAffx.25660.1.S1_at--475--10551Chr03:28840053..28840077 (25 bp)
TTCTTGCCATTCCAACAACGTGCAC
LOC_Os03g50590
Target Sequence 
TCGCTCTGTTTCTTCTTGCTCATGTCTCTCCTTGTCCATAGCTCGCATGGCGCACGCCCGTCTCCACGCGAGCTTCAGGG
ATGGTTTGCGGCGGCGGCGGGATCATCGTCCGCGGAGAAGCAGTTGGTGGATCCACGGATCATCGCCGCTGGCGCAGCAG
GCCGTGTCGCGGATGTCGTCGCGGCGCCGGTGATGACGGTGACGACACCGGCTGGCGCCGTGGGCGACGATCGGCGTAGA
CGCGGCGGTGATGACGACGTGCAGCTTCTTCCGCGGCGGGGGAGGAGCGTCGGCGTCGCGCTGGTGATGGCGCGGGCGGC
GCGTCGCGCTCTGGCGGCGGCTGCGGCGGCGGCGGCGTCCTCCTCCGCCACGGACGGCACTGGTCCTTCTTGCCATTCCA
ACAACGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis