Browse Element(s) Details


OsAffx.25729.1.S1_at

Description tigr:9631.m05476
TID=OsAffx.25729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5605011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56030OsAffx.25728.1.S1_at11/113+31836993..31839169hypothetical protein
LOC_Os03g56040Os.19099.1.S1_x_at1/113+31849671..31851842retrotransposon, putative, centromere-specific
LOC_Os03g56050OsAffx.25729.1.S1_at11/113+31861000..31866063AP2 domain containing protein, expressed
LOC_Os03g56060Os.10855.1.S1_at11/113+31869482..31873355glycosyl transferase, group 2 family protein, expressed
LOC_Os03g56070Os.11015.1.S1_at9/113+31881522..31884082expressed protein
LOC_Os03g56080OsAffx.13501.1.S1_at11/113+31886081..31886530hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25729.1.S1_at--29--3811Chr03:31864370..31864750 (25 bp)
CTCGCCGGCGGAACAACGTGTTGGT
LOC_Os03g56050
OsAffx.25729.1.S1_at--264--3251Chr03:31864739..31864763 (25 bp)
CAACGTGTTGGTTTTGCAAAGCCGA
LOC_Os03g56050
OsAffx.25729.1.S1_at--986--5131Chr03:31864754..31864778 (25 bp)
GCAAAGCCGAACTCACTGTGGTGGT
LOC_Os03g56050
OsAffx.25729.1.S1_at--11--1971Chr03:31864768..31864792 (25 bp)
ACTGTGGTGGTGTTTATCATCTCAA
LOC_Os03g56050
OsAffx.25729.1.S1_at--425--8971Chr03:31864800..31864824 (25 bp)
TGAAAGCACATTCTCGATCGAACGG
LOC_Os03g56050
OsAffx.25729.1.S1_at--133--3411Chr03:31864884..31864903 (20 bp)
CAGCTTCTCTCGATCGGACGAATGA
LOC_Os03g56050
OsAffx.25729.1.S1_at--611--1891Chr03:31865901..31865923 (23 bp)
ACGTTAGGTGTGTCATCGGTCGCCG
LOC_Os03g56050
OsAffx.25729.1.S1_at--756--951Chr03:31865942..31865966 (25 bp)
AGGACGTCGCCCTCTCATGTGTTTT
LOC_Os03g56050
OsAffx.25729.1.S1_at--295--791Chr03:31865958..31865982 (25 bp)
ATGTGTTTTCCTACACTACTCTCTG
LOC_Os03g56050
OsAffx.25729.1.S1_at--1118--2011Chr03:31865972..31865996 (25 bp)
ACTACTCTCTGACTTGGGAACTCAT
LOC_Os03g56050
OsAffx.25729.1.S1_at--1152--4411Chr03:31866009..31866033 (25 bp)
GCCATCCTTTGTGAGATACGTCCAG
LOC_Os03g56050
Target Sequence 
CTCGCCGGCGGAACAACGTGTTGGTTTTGCAAAGCCGAACTCACTGTGGTGGTGTTTATCATCTCAAAGTAAATTGAAAG
CACATTCTCGATCGAACGGCGGCCGTAAACCCTCCAGAGGTTCGGAGAAAAATCCTCCGAACCCCTGCATGACCTTCTCA
GCTTCTCTCGATCGGACGAATGAATTTGAAGATGCGACTTTGCATGTAGATGTAATACTATTGAAAGTGCATTTGGTGTA
CACGTTAGGTGTGTCATCGGTCGCCGCCTCGCCGCGCGTCACAGAGGACGTCGCCCTCTCATGTGTTTTCCTACACTACT
CTCTGACTTGGGAACTCATTCCCTCCGCACAGCCATCCTTTGTGAGATACGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis