Browse Element(s) Details


OsAffx.25949.1.S1_at

Description tigr:9632.m00889
TID=OsAffx.25949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1017011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein
LOC_Os04g10180OsAffx.25950.1.S1_at11/114+5485954..5487442hypothetical protein
LOC_Os04g10190NANA4+5488983..5491937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10200Os.10703.2.S1_x_at1/114+5492254..5498352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10210OsAffx.25951.1.S1_at10/114+5498787..5501220hypothetical protein
LOC_Os04g10219NANA4+5502856..5503567hypothetical protein
LOC_Os04g10230OsAffx.25952.2.S1_at10/114+5503908..5504930hypothetical protein
LOC_Os04g10240Os.12939.1.S1_s_at10/114+5506869..5510298expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25949.1.S1_at--945--1151Chr04:5484411..5484435 (25 bp)
AGTCACGTGAAGAGGCGGCATGTTC
LOC_Os04g10170
OsAffx.25949.1.S1_at--403--6731Chr04:5484432..5484456 (25 bp)
GTTCAGAGGCTAGTGCAACGGGTTT
LOC_Os04g10170
OsAffx.25949.1.S1_at--971--7651Chr04:5484465..5484489 (25 bp)
GGGTTCCTAACACTAATGGCTGGCC
LOC_Os04g10170
OsAffx.25949.1.S1_at--1043--851Chr04:5484480..5484504 (25 bp)
ATGGCTGGCCTCGTGTTAAGGGCAA
LOC_Os04g10170
OsAffx.25949.1.S1_at--990--10491Chr04:5484495..5484519 (25 bp)
TTAAGGGCAAGCACCCTCATCGTCG
LOC_Os04g10170
OsAffx.25949.1.S1_at--325--511Chr04:5484513..5484537 (25 bp)
ATCGTCGCTGCCTTTCAGCTTGTTT
LOC_Os04g10170
OsAffx.25949.1.S1_at--202--10811Chr04:5484532..5484556 (25 bp)
TTGTTTGTGCCCTATTCTGGCTAAT
LOC_Os04g10170
OsAffx.25949.1.S1_at--14--10611Chr04:5484546..5484728 (25 bp)
TTCTGGCTAATCTTAGAGGCATTGA
LOC_Os04g10170
OsAffx.25949.1.S1_at--894--8871Chr04:5484726..5484750 (25 bp)
TGATGTGCCAATTGATGGCCCTAAG
LOC_Os04g10170
OsAffx.25949.1.S1_at--407--3611Chr04:5484774..5484798 (25 bp)
CATTGGGTCCGCAAGCAGCAGTTTC
LOC_Os04g10170
OsAffx.25949.1.S1_at--41--2731Chr04:5484786..5484810 (25 bp)
AAGCAGCAGTTTCCTAGCGGCGATG
LOC_Os04g10170
Target Sequence 
AGTCACGTGAAGAGGCGGCATGTTCAGAGGCTAGTGCAACGGGTTTGAGTCGTAGGGTTCCTAACACTAATGGCTGGCCT
CGTGTTAAGGGCAAGCACCCTCATCGTCGCTGCCTTTCAGCTTGTTTGTGCCCTATTCTGGCTAATCTTAGAGGCATTGA
TGTGCCAATTGATGGCCCTAAGGGAGGTCATGGGGCCCACAACTGCATTGGGTCCGCAAGCAGCAGTTTCCTAGCGGCGA
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis