Browse Element(s) Details


Os.12939.1.S1_s_at

Description gb:CF281266
DB_XREF= gi:33658653
DB_XREF=14ETL--08-E01.b1
CLONE=14ETL--08-E01
TID=Os.12939.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12939 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_193178.1 (A.thaliana) elicitor like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1024010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein
LOC_Os04g10180OsAffx.25950.1.S1_at11/114+5485954..5487442hypothetical protein
LOC_Os04g10190NANA4+5488983..5491937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10200Os.10703.2.S1_x_at1/114+5492254..5498352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10210OsAffx.25951.1.S1_at10/114+5498787..5501220hypothetical protein
LOC_Os04g10219NANA4+5502856..5503567hypothetical protein
LOC_Os04g10230OsAffx.25952.2.S1_at10/114+5503908..5504930hypothetical protein
LOC_Os04g10240Os.12939.1.S1_s_at10/114+5506869..5510298expressed protein
LOC_Os04g10250OsAffx.14731.1.S1_at11/114+5514966..5518273hypothetical protein
LOC_Os04g10250OsAffx.14731.2.S1_at2/114+5514966..5518273hypothetical protein
LOC_Os04g10260OsAffx.25953.1.S1_at11/114+5519583..5525480hypothetical protein
LOC_Os04g10270Os.31312.5.S1_x_at5/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10270Os.31312.2.S1_x_at4/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_x_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_at1/114+5531456..5537590retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12939.1.S1_s_at--1161--8491Chr04:5508242..5508261 (20 bp)
TGGCAGTGCCACATATTGATATAAA
LOC_Os04g10240
Os.12939.1.S1_s_at--734--71Chr04:5508121..5508145 (25 bp)
ATTGCTGCTACCATGTTTCTTAAAG
LOC_Os04g10240
Os.12939.1.S1_s_at--1067--4811NONE
GCTCATTTGGAGCATTCCTACTGCT
NONE
Os.12939.1.S1_s_at--1154--9651Chr04:5507341..5507365 (25 bp)
TCAGCTTTTCGTCAAGTTCTCACAG
LOC_Os04g10240
Os.12939.1.S1_s_at--531--6731Chr04:5507223..5507350 (25 bp)
GTTCTCACAGAATTTGGCACTTTTT
LOC_Os04g10240
Os.12939.1.S1_s_at--954--7611Chr04:5507093..5507117 (25 bp)
GGGAAGCTATTTGTGCTCCTTATGT
LOC_Os04g10240
Os.12939.1.S1_s_at--525--7311Chr04:5507081..5507105 (25 bp)
GTGCTCCTTATGTTTGCATACTTTA
LOC_Os04g10240
Os.12939.1.S1_s_at--921--1171Chr04:5507053..5507077 (25 bp)
AGTACATGTCTCAATTTTCCTCTTG
LOC_Os04g10240
Os.12939.1.S1_s_at--450--3131Chr04:5507041..5507065 (25 bp)
AATTTTCCTCTTGATACTCCATAGA
LOC_Os04g10240
Os.12939.1.S1_s_at--226--9651Chr04:5506958..5506982 (25 bp)
TCAGTTCTGTTATCGGTATATCCCG
LOC_Os04g10240
Os.12939.1.S1_s_at--847--10191Chr04:5506942..5506966 (25 bp)
TATATCCCGTTGTGTTTCTTCTGTC
LOC_Os04g10240
Target Sequence 
TGGCAGTGCCACATATTGATATAAAGACTGTCATTGCTGCTACCATGTTTCTTAAAGGCTTTNGGTGGTCTTCTGTTCAT
CANTCAGCAGCTCATTTGGAGCATTCCTACTGCTCCTGTACTTAGCANTTATAACACCTGTTGTGTACGACTTCTACAAC
TATGAAATGGAGTCTTCACAATTTGTTCAGCTTTTCGTCAAGTTCTCACAGAATTTGGCACTTTTTGGTGCCCTGCTTTT
CTTCTTGGGAATGAAGAACTCTATTCCTAGAAGACATTCCAAGAGGAGGGCNGGGAAGACCAAGACAANCTGAAACCAGC
NACTGTAGTAGGGGAAGCTATTTGTGCTCCTTATGTTTGCATACTTTACAAAGTACATGTCTCAATTTTCCTCTTGATAC
TCCATAGAAATTGTGAATTGGGGACTTAACAGAACCTAGTATGTAGGATACCTAAGTATGTCTTTATCAGTTCTGTTATC
GGTATATCCCGTTGTGTTTCTTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12939.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis