Browse Element(s) Details


OsAffx.25951.1.S1_at

Description tigr:9632.m00893
TID=OsAffx.25951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1021010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10170OsAffx.25949.1.S1_at11/114+5484368..5484840hypothetical protein
LOC_Os04g10180OsAffx.25950.1.S1_at11/114+5485954..5487442hypothetical protein
LOC_Os04g10190NANA4+5488983..5491937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10200Os.10703.2.S1_x_at1/114+5492254..5498352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10210OsAffx.25951.1.S1_at10/114+5498787..5501220hypothetical protein
LOC_Os04g10219NANA4+5502856..5503567hypothetical protein
LOC_Os04g10230OsAffx.25952.2.S1_at10/114+5503908..5504930hypothetical protein
LOC_Os04g10240Os.12939.1.S1_s_at10/114+5506869..5510298expressed protein
LOC_Os04g10250OsAffx.14731.1.S1_at11/114+5514966..5518273hypothetical protein
LOC_Os04g10250OsAffx.14731.2.S1_at2/114+5514966..5518273hypothetical protein
LOC_Os04g10260OsAffx.25953.1.S1_at11/114+5519583..5525480hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25951.1.S1_at--20--10731Chr04:5501040..5501064 (25 bp)
TTGCTTGTCTACGAGAACGAGGACT
LOC_Os04g10210
OsAffx.25951.1.S1_at--906--1831Chr04:5501024..5501048 (25 bp)
ACGAGGACTTTGTGCTGGAGTACGA
LOC_Os04g10210
OsAffx.25951.1.S1_at--35--1391Chr04:5500975..5500999 (25 bp)
AGACGAAGCCGTTTCTGCTGGTGGT
LOC_Os04g10210
OsAffx.25951.1.S1_at--914--911Chr04:5500668..5500692 (25 bp)
AGGCTGCTGCCCCTCTTGTTAAGGG
LOC_Os04g10210
OsAffx.25951.1.S1_at--95--5071Chr04:5500505..5500529 (25 bp)
GCAGCTTGTGCTGGCTTTGCCGAAA
LOC_Os04g10210
OsAffx.25951.1.S1_at--550--8491Chr04:5500494..5500518 (25 bp)
TGGCTTTGCCGAAACCGGGCACGAC
LOC_Os04g10210
OsAffx.25951.1.S1_at--465--3991Chr04:5500479..5500503 (25 bp)
CGGGCACGACGACTAGCTTGACAAA
LOC_Os04g10210
OsAffx.25951.1.S1_at--948--10731Chr04:5500462..5500486 (25 bp)
TTGACAAACCCAAGCAAACGCCATG
LOC_Os04g10210
OsAffx.25951.1.S1_at--163--2371Chr04:5500447..5500471 (25 bp)
AAACGCCATGAAACCGAGCCTCATA
LOC_Os04g10210
OsAffx.25951.1.S1_at--530--5871NONE
GAGCCTCATACTACTTCTCTCAGAG
NONE
OsAffx.25951.1.S1_at--169--4791Chr04:5498963..5498987 (25 bp)
GCTCTAACGAGCTGCGGCATCGGTG
LOC_Os04g10210
Target Sequence 
TTGCTTGTCTACGAGAACGAGGACTTTGTGCTGGAGTACGAGGGCAAGGTGGTCAGGTATGGAGGAGACGAAGCCGTTTC
TGCTGGTGGTGGCAGTAGAGGGGAGGATCCGGTGATGGAGAAGGAGAAAGAGAAGGAGAAGGAGGTGGACGTTGTGATGA
AAAAGGTAGTGGACAAGGAAAAGATGGATGAGAAGAATGAGGCTGCTGCCCCTCTTGTTAAGGGGAAAGGTGTTGGAAAG
GTGATCGGAATGGAAGTAGAAGATGAGCAGCTTGTGCTGGCTTTGCCGAAACCGGGCACGACGACTAGCTTGACAAACCC
AAGCAAACGCCATGAAACCGAGCCTCATACTACTTCTCTCAGAGGAGGAGTGGCTGGGGTAGGGGCAGCGGCGGCGGTGG
CTCTAACGAGCTGCGGCATCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis