Browse Element(s) Details


OsAffx.26136.1.S1_at

Description tigr:9632.m02422
TID=OsAffx.26136.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2484011/11hypothetical protein
LOC_Os04g2582011/11hypothetical protein
LOC_Os04g248501/11UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os04g258001/11Cytokinin-O-glucosyltransferase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24830OsAffx.26149.1.S1_at10/114+14258728..14261051hypothetical protein
LOC_Os04g24840OsAffx.26136.1.S1_at11/114+14275728..14281927hypothetical protein
LOC_Os04g24850OsAffx.26136.1.S1_at1/114+14287060..14288570UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os04g24860OsAffx.31069.2.S1_at11/114+14304672..14306163hypothetical protein
LOC_Os04g24860OsAffx.31069.2.S1_x_at11/114+14304672..14306163hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26136.1.S1_at--197--2232Chr04:14964168..14964192 (25 bp)
ACAAGTGACGCTGCTAGGTGGGCCC
LOC_Os04g25820
OsAffx.26136.1.S1_at--989--8634Chr04:14964193..14964217 (25 bp)
TGGGACACCAACCTTGACCGAGTCA
LOC_Os04g25820
OsAffx.26136.1.S1_at--750--8932Chr04:14964207..14964231 (25 bp)
TGACCGAGTCATCCACGAGGTGCTG
LOC_Os04g25820
OsAffx.26136.1.S1_at--1081--1512Chr04:14965784..14965808 (25 bp)
AGCAGCAGCACAAATTCCTGGAGCA
LOC_Os04g25820
OsAffx.26136.1.S1_at--1028--9212Chr04:14965820..14965844 (25 bp)
TCCAGATGCCACAGAATTTCCAGAA
LOC_Os04g25820
OsAffx.26136.1.S1_at--289--1512Chr04:14965850..14965874 (25 bp)
AGCACCAATCTTCAGCAGTAGCAAT
LOC_Os04g25820
OsAffx.26136.1.S1_at--496--5032Chr04:14965864..14965888 (25 bp)
GCAGTAGCAATATCATTCCAGCAAC
LOC_Os04g25820
OsAffx.26136.1.S1_at--475--4732Chr04:14966230..14966254 (25 bp)
GCTGTGCCAGTCTACCATGACGAAC
LOC_Os04g25820
OsAffx.26136.1.S1_at--195--5292Chr04:14966305..14966329 (25 bp)
GAAGGCCGTACGAGTAACGATGCCA
LOC_Os04g25820
OsAffx.26136.1.S1_at--110--8152Chr04:14966341..14966365 (25 bp)
GGACACCAACCTTGATCGGATCATC
LOC_Os04g25820
OsAffx.26136.1.S1_at--310--6432Chr04:14966359..14966383 (25 bp)
GATCATCCACGAGGTGTTGCTGTCA
LOC_Os04g25820
Target Sequence 
ACAAGTGACGCTGCTAGGTGGGCCCTGGGACACCAACCTTGACCGAGTCATCCACGAGGTGCTGCTGTCATGTAAGGATA
AAACTCTCAGNGTGAATGCATCAGCATCAGCACAAATTCTTGCATTATATGAGCTTCAGAAGCAGCAGCACAAATTCCTG
GAGCANCAACATAATTTCCAGATGCCACAGAATTTCCAGAAGCAACAGCACCAATCTTCAGCAGTAGCAATATCATTCCA
GCAACAGCAGCAGCAACAGATTCTAGCTAACAGCACCATTAAAGCGGGAAGTTTAATTTTCCCGTTGGCGACGCCCGGTG
CCGAGGACGAGGACGCCACGCAGGACATCCCCGCGCTGTGCCAGTCTACCATGACGAACTGCCTCGGCCACCTCCTCGCG
CTGCTGGCGAGGCTCAAAGAGTGGAAGGAGAAGGCCGTACGAGTAACGATGCCAAGTGGGCCCGGGGACACCAACCTTGA
TCGGATCATCCACGAGGTGTTGCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis