Browse Element(s) Details


OsAffx.31069.2.S1_at

Description tigr:9632.m02324
TID=OsAffx.31069.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2486011/11hypothetical protein
LOC_Os04g257702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24840OsAffx.26136.1.S1_at11/114+14275728..14281927hypothetical protein
LOC_Os04g24850OsAffx.26136.1.S1_at1/114+14287060..14288570UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os04g24860OsAffx.31069.2.S1_at11/114+14304672..14306163hypothetical protein
LOC_Os04g24860OsAffx.31069.2.S1_x_at11/114+14304672..14306163hypothetical protein
LOC_Os04g24870NANA4+14306990..14308039retrotransposon protein, putative, unclassified
LOC_Os04g24880OsAffx.21161.1.S1_at3/114+14308560..14311289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24900Os.49625.1.S1_at1/114+14320717..14321075hypothetical protein
LOC_Os04g24910OsAffx.26138.1.S1_at11/114+14326739..14327175hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31069.2.S1_at--221--1391Chr04:14305857..14305881 (25 bp)
AGACCTTGTGAGTGCGCTTGCCGAT
LOC_Os04g24860
OsAffx.31069.2.S1_at--190--5851Chr04:14305858..14305882 (25 bp)
GACCTTGTGAGTGCGCTTGCCGATC
LOC_Os04g24860
OsAffx.31069.2.S1_at--1098--10811Chr04:14305862..14305886 (25 bp)
TTGTGAGTGCGCTTGCCGATCGTGA
LOC_Os04g24860
OsAffx.31069.2.S1_at--477--7391Chr04:14305864..14305888 (25 bp)
GTGAGTGCGCTTGCCGATCGTGATC
LOC_Os04g24860
OsAffx.31069.2.S1_at--104--9171Chr04:14305875..14305899 (25 bp)
TGCCGATCGTGATCGTCGCATCCAG
LOC_Os04g24860
OsAffx.31069.2.S1_at--289--5391Chr04:14305956..14305980 (25 bp)
GAAGCACCGGGCACTGGAAGCACTC
LOC_Os04g24860
OsAffx.31069.2.S1_at--491--1491Chr04:14305958..14305982 (25 bp)
AGCACCGGGCACTGGAAGCACTCCG
LOC_Os04g24860
OsAffx.31069.2.S1_at--519--10792Chr04:14306019..14306043 (25 bp)
TTGTTGCAAAACCATGGCCATAGTC
LOC_Os04g24860
OsAffx.31069.2.S1_at--826--6652Chr04:14306021..14306045 (25 bp)
GTTGCAAAACCATGGCCATAGTCTG
LOC_Os04g24860
OsAffx.31069.2.S1_at--778--3271Chr04:14306025..14306049 (25 bp)
CAAAACCATGGCCATAGTCTGCAGG
LOC_Os04g24860
OsAffx.31069.2.S1_at--512--2431Chr04:14306026..14306050 (25 bp)
AAAACCATGGCCATAGTCTGCAGGG
LOC_Os04g24860
Target Sequence 
AGACCTTGTGAGTGCGCTTGCCGATCGTGATCGTCGCATCCAGTACTGGAGGATGAAGTTTGAGGTCGCCGAACTCGAGA
GGACTATGCTGGAAGTCAAGAAGCACCGGGCACTGGAAGCACTCCGAGGTCGCGAGGTGTGGTTCAACTCGTACCTCAGG
AGTTGTTGCAAAACCATGGCCATAGTCTGCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31069.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis