Browse Element(s) Details


Os.49625.1.S1_at

Description gb:AK061480.1
DB_XREF= gi:32971498
TID=Os.49625.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G10, full insert sequence.
FL= gb:AK069369.1 gb:AK061480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2574011/11expressed protein
LOC_Os04g249001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25700Os.26886.6.S1_s_at9/114+14881274..14882507hypothetical protein
LOC_Os04g25700Os.26886.2.S1_s_at8/114+14881274..14882507hypothetical protein
LOC_Os04g25700OsAffx.16467.1.S1_at6/114+14881274..14882507hypothetical protein
LOC_Os04g25710NANA4+14882706..14884523transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25720OsAffx.26148.1.S1_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25720OsAffx.26148.1.S1_x_at11/114+14885033..14885737hypothetical protein
LOC_Os04g25730Os.26886.3.S1_x_at6/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25730Os.26886.1.S1_x_at4/114+14887169..14890502transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25740Os.49625.1.S1_at11/114+14902507..14904947expressed protein
LOC_Os04g25740Os.49625.1.S2_at11/114+14902507..14904947expressed protein
LOC_Os04g25750OsAffx.21161.1.S1_at3/114+14913176..14915206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g25760NANA4+14915832..14916776retrotransposon protein, putative, unclassified
LOC_Os04g25770OsAffx.31069.5.S1_at5/114+14916917..14919085hypothetical protein
LOC_Os04g25770OsAffx.31069.2.S1_x_at3/114+14916917..14919085hypothetical protein
LOC_Os04g25770OsAffx.31069.5.S1_x_at3/114+14916917..14919085hypothetical protein
LOC_Os04g25770OsAffx.8916.1.S1_at3/114+14916917..14919085hypothetical protein
LOC_Os04g25770Os.53479.1.S1_x_at2/114+14916917..14919085hypothetical protein
LOC_Os04g25770OsAffx.31069.2.S1_at2/114+14916917..14919085hypothetical protein
LOC_Os04g25770OsAffx.8916.1.S1_x_at1/114+14916917..14919085hypothetical protein
LOC_Os04g25780NANA4+14920806..14925695retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49625.1.S1_at--67--9491Chr04:14902851..14902875 (25 bp)
TCTGCCATTGGCTTGGCCCGGGCGC
LOC_Os04g25740
Os.49625.1.S1_at--46--4532Chr04:14902996..14903020 (25 bp)
GCCGCGTGTGGTAAGCCCGGACAGA
LOC_Os04g25740
Os.49625.1.S1_at--191--7771Chr04:14903173..14903197 (25 bp)
GGTGAATCTACCGTCAGGCAGGCCA
LOC_Os04g25740
Os.49625.1.S1_at--1121--9511Chr04:14903179..14903203 (25 bp)
TCTACCGTCAGGCAGGCCATTGGGC
LOC_Os04g25740
Os.49625.1.S1_at--622--172Chr04:14903218..14903242 (25 bp)
ATTTATTTTCGCAGGCCTTTGCTTC
LOC_Os04g25740
Os.49625.1.S1_at--1071--132Chr04:14903230..14903254 (25 bp)
AGGCCTTTGCTTCTAGACGGTTCGT
LOC_Os04g25740
Os.49625.1.S1_at--132--652Chr04:14903261..14903285 (25 bp)
ATGCATCTTTCCCACTGAGTTACTT
LOC_Os04g25740
Os.49625.1.S1_at--23--10312Chr04:14903268..14903292 (25 bp)
TTTCCCACTGAGTTACTTGTCTCTT
LOC_Os04g25740
Os.49625.1.S1_at--657--6772Chr04:14903279..14903303 (25 bp)
GTTACTTGTCTCTTTTGTTTACATG
LOC_Os04g25740
Os.49625.1.S1_at--1031--8772Chr04:14903294..14903318 (25 bp)
TGTTTACATGAGTTTTACGCGCAAA
LOC_Os04g25740
Os.49625.1.S1_at--1134--9932Chr04:14903309..14903333 (25 bp)
TACGCGCAAATTGCAGTCTAATTTT
LOC_Os04g25740
Target Sequence 
TCTGCCATTGGCTTGGCCCGGGCGCGTGGATCCGCCGCTGGCTGGTCTCGGGGANGGGGAGGGGNNNNNNNGNNGNNNNG
GAGGAGAGGCGGCGGCTCACCTCCTCGCTCTCCCTTCGTCGCACCGATGACGATGGCGACGACGGCGCCGCGTGTGGTAA
GCCCGGACAGAGGAAGAGAGGCAGCGACGCACGACGACGGCCTCAACGATGTCGCCGCCAGCTGTTGGGGAGGCCAGCGG
ACGGAGGAGGAGAGCCATCGGCCAGAGGGGAGGCCGGCGGCGGTGCCTTTTTTTTTTATTTGCTGTGATGTTTTTCGCAG
GCGGGTGAATCTACCGTCAGGCAGGCCATTGGGCCGCCTGCAAAAATCATTTATTTTCGCAGGCCTTTGCTTCTAGACGG
TTCGTTCCCCCATGCATCTTTCCCACTGAGTTACTTGTCTCTTTTGTTTACATGAGTTTTACGCGCAAATTGCAGTCTAA
TTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis