Browse Element(s) Details


OsAffx.26138.1.S1_at

Description tigr:9632.m02329
TID=OsAffx.26138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2491011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24860OsAffx.31069.2.S1_at11/114+14304672..14306163hypothetical protein
LOC_Os04g24860OsAffx.31069.2.S1_x_at11/114+14304672..14306163hypothetical protein
LOC_Os04g24870NANA4+14306990..14308039retrotransposon protein, putative, unclassified
LOC_Os04g24880OsAffx.21161.1.S1_at3/114+14308560..14311289retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24900Os.49625.1.S1_at1/114+14320717..14321075hypothetical protein
LOC_Os04g24910OsAffx.26138.1.S1_at11/114+14326739..14327175hypothetical protein
LOC_Os04g24920Os.26886.3.S1_x_at5/114+14333359..14336711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24920Os.26886.1.S1_x_at1/114+14333359..14336711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24930NANA4+14338222..14338488hypothetical protein
LOC_Os04g24940Os.26886.6.S1_s_at10/114+14339056..14341790hypothetical protein
LOC_Os04g24940Os.26886.2.S1_s_at8/114+14339056..14341790hypothetical protein
LOC_Os04g24940OsAffx.16467.1.S1_at4/114+14339056..14341790hypothetical protein
LOC_Os04g24950OsAffx.3884.1.S1_at11/114+14346003..14348332hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26138.1.S1_at--766--4612Chr04:14326769..14326793 (25 bp)
GCGAGATTATCGTTCGCTTGCGAAA
LOC_Os04g24910
OsAffx.26138.1.S1_at--661--10112Chr04:14326776..14326800 (25 bp)
TATCGTTCGCTTGCGAAAATCTATT
LOC_Os04g24910
OsAffx.26138.1.S1_at--916--2252Chr04:14326792..14326816 (25 bp)
AAATCTATTTTTGCAGGCATACCTC
LOC_Os04g24910
OsAffx.26138.1.S1_at--377--5011Chr04:14326804..14326828 (25 bp)
GCAGGCATACCTCTTAAGTGGTCAT
LOC_Os04g24910
OsAffx.26138.1.S1_at--495--2872Chr04:14326819..14326843 (25 bp)
AAGTGGTCATTTTTACAGGCGGTAT
LOC_Os04g24910
OsAffx.26138.1.S1_at--507--9812Chr04:14326832..14326948 (25 bp)
TACAGGCGGTATCTTAAGAGTCCTA
LOC_Os04g24910
OsAffx.26138.1.S1_at--378--2791Chr04:14326942..14326963 (22 bp)
AAGAGTCCTAGATCAGAGCAGCGGT
LOC_Os04g24910
OsAffx.26138.1.S1_at--194--9251Chr04:14326944..14326968 (25 bp)
TCCTAGATCAGAGCAGCGGTGGCCT
LOC_Os04g24910
OsAffx.26138.1.S1_at--1067--3412Chr04:14326952..14326976 (25 bp)
CAGAGCAGCGGTGGCCTGGCATTAA
LOC_Os04g24910
OsAffx.26138.1.S1_at--962--972Chr04:14326976..14327000 (25 bp)
AGGAGGTGTGGAGGCAGCTACCCTA
LOC_Os04g24910
OsAffx.26138.1.S1_at--984--6692Chr04:14327021..14327045 (25 bp)
GTCCCAGTTCCGAGCGACTACAACG
LOC_Os04g24910
Target Sequence 
GCGAGATTATCGTTCGCTTGCGAAAATCTATTTTTGCAGGCATACCTCTTAAGTGGTCATTTTTACAGGCGGTATCTTAA
GAGTCCTAGATCAGAGCAGCGGTGGCCTGGCATTAAGGAGGTGTGGAGGCAGCTACCCTACCCTCCCTTCGTCACTCCCA
GTCCCAGTTCCGAGCGACTACAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis