Browse Element(s) Details


OsAffx.3884.1.S1_at

Description tigr:9632.m02333
TID=OsAffx.3884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2495011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24900Os.49625.1.S1_at1/114+14320717..14321075hypothetical protein
LOC_Os04g24910OsAffx.26138.1.S1_at11/114+14326739..14327175hypothetical protein
LOC_Os04g24920Os.26886.3.S1_x_at5/114+14333359..14336711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24920Os.26886.1.S1_x_at1/114+14333359..14336711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24930NANA4+14338222..14338488hypothetical protein
LOC_Os04g24940Os.26886.6.S1_s_at10/114+14339056..14341790hypothetical protein
LOC_Os04g24940Os.26886.2.S1_s_at8/114+14339056..14341790hypothetical protein
LOC_Os04g24940OsAffx.16467.1.S1_at4/114+14339056..14341790hypothetical protein
LOC_Os04g24950OsAffx.3884.1.S1_at11/114+14346003..14348332hypothetical protein
LOC_Os04g24960Os.47463.1.S1_x_at3/114+14357277..14362759transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24960Os.14491.2.S1_x_at3/114+14357277..14362759transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24970Os.47114.1.S1_x_at1/114+14363791..14367933transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g24980NANA4+14368180..14370082retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24989NANA4+14371585..14373132retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3884.1.S1_at--241--9912Chr04:15363203..15363227 (25 bp)
TACTGCCGCAGCCAAACTTTGTTTT
NONE
OsAffx.3884.1.S1_at--805--5731Chr04:14347267..14347580 (25 bp)
GACTGGATTATATTCGGTGACATAC
LOC_Os04g24950
OsAffx.3884.1.S1_at--851--5431Chr04:14347231..14347255 (25 bp)
GAACAGGGACGTTCCCTTGAGGGAT
LOC_Os04g24950
OsAffx.3884.1.S1_at--753--5211Chr04:14347191..14347215 (25 bp)
GAATATCCTTCCTTCCACGAAAAGA
LOC_Os04g24950
OsAffx.3884.1.S1_at--928--7352Chr04:14876268..14876292 (25 bp)
GTGAAGCATTGCTCCCAGATGTCAA
NONE
OsAffx.3884.1.S1_at--896--2312Chr04:14876381..14876403 (23 bp)
AAAGGTCTGGCTATGTTGTAAACAA
NONE
OsAffx.3884.1.S1_at--518--1512Chr04:14876407..14876431 (25 bp)
AGCAGCTAGTGCTACCCTAAACAAC
NONE
OsAffx.3884.1.S1_at--647--2451Chr04:14346999..14347023 (25 bp)
AACAACCTTGTTATAGGCTCCGCCA
LOC_Os04g24950
OsAffx.3884.1.S1_at--774--10091Chr04:14346986..14347010 (25 bp)
TAGGCTCCGCCAGTAAAACCAGCAA
LOC_Os04g24950
OsAffx.3884.1.S1_at--63--152Chr04:14876464..14876488 (25 bp)
ATTAGCTGCTTGTGTCCAATACCTG
NONE
OsAffx.3884.1.S1_at--856--10831Chr04:14346952..14346976 (25 bp)
TTGTGTCCAATACCTGTGCTTCAAT
LOC_Os04g24950
Target Sequence 
TACTGCCGCAGCCAAACTTTGTTTTTGGTGACTGGATTATATTCGGTGACATACATAAAAGGAAGGAACAGGGACGTTCC
CTTGAGGGATAAATATTCACTTCTGGAATATCCTTCCTTCCACGAAAAGAGCAGTTTTCGTGAAGCATTGCTCCCAGATG
TCAAAAGGTCTGGCTATGTTGTAAACAATGCAGCAGCTAGTGCTACCCTAAACAACCTTGTTATAGGCTCCGCCAGTAAA
ACCAGCAAATTAGCTGCTTGTGTCCAATACCTGTGCTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis