Browse Element(s) Details


OsAffx.26182.1.S1_at

Description tigr:9632.m02578
TID=OsAffx.26182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2737011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27330OsAffx.29383.1.S1_x_at1/114+15962539..15963018hypothetical protein
LOC_Os04g27340Os.52600.1.S1_at10/114+15964240..15975429Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27340Os.27794.1.S1_at3/114+15964240..15975429Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27350NANA4+15979319..15980591retrotransposon protein, putative, LINE subclass
LOC_Os04g27360NANA4+15981058..15981846retrotransposon protein, putative, unclassified
LOC_Os04g27370OsAffx.26182.1.S1_at11/114+15985998..15986219hypothetical protein
LOC_Os04g27380NANA4+15990438..15991052retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27400NANA4+15999802..16004365Terpene synthase family, metal binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26182.1.S1_at--1159--3492Chr04:15986028..15986052 (25 bp)
CATGGAATGAATTATGCCCTCAAGA
LOC_Os04g27370
OsAffx.26182.1.S1_at--783--10431Chr04:15986039..15986063 (25 bp)
TTATGCCCTCAAGAGGTCCATCGAG
LOC_Os04g27370
OsAffx.26182.1.S1_at--732--7252Chr04:15986054..15986078 (25 bp)
GTCCATCGAGGACAGCGGAAACCAA
LOC_Os04g27370
OsAffx.26182.1.S1_at--624--5292Chr04:15986064..15986088 (25 bp)
GACAGCGGAAACCAAATAAGTCCCA
LOC_Os04g27370
OsAffx.26182.1.S1_at--853--232Chr04:15986079..15986103 (25 bp)
ATAAGTCCCAAGACCTCAGTTCCGG
LOC_Os04g27370
OsAffx.26182.1.S1_at--5--9632Chr04:15986094..15986118 (25 bp)
TCAGTTCCGGCCACCGCTGAATCGA
LOC_Os04g27370
OsAffx.26182.1.S1_at--188--8452Chr04:15986102..15986126 (25 bp)
GGCCACCGCTGAATCGAAGCTTTGG
LOC_Os04g27370
OsAffx.26182.1.S1_at--45--3372Chr04:15986105..15986129 (25 bp)
CACCGCTGAATCGAAGCTTTGGGAT
LOC_Os04g27370
OsAffx.26182.1.S1_at--101--8012Chr04:15986126..15986150 (25 bp)
GGATGTGTTTGGTGAACCCGTTCTT
LOC_Os04g27370
OsAffx.26182.1.S1_at--86--10832Chr04:15986134..15986158 (25 bp)
TTGGTGAACCCGTTCTTGGTGATTT
LOC_Os04g27370
OsAffx.26182.1.S1_at--408--4112Chr04:15986165..15986189 (25 bp)
CGAAATAAGGGCATGTGCTGAGCAG
LOC_Os04g27370
Target Sequence 
CATGGAATGAATTATGCCCTCAAGAGGTCCATCGAGGACAGCGGAAACCAAATAAGTCCCAAGACCTCAGTTCCGGCCAC
CGCTGAATCGAAGCTTTGGGATGTGTTTGGTGAACCCGTTCTTGGTGATTTTGGATGCGAAATAAGGGCATGTGCTGAGC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis