Browse Element(s) Details


OsAffx.26312.1.S1_at

Description tigr:9632.m03240
TID=OsAffx.26312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3377011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33740Os.50640.1.S1_at10/114+20234783..20239629Beta-fructofuranosidase, insoluble isoenzyme 2 precursor, putative, expressed
LOC_Os04g33750Os.12220.1.S1_at11/114+20245097..2024836640S ribosomal protein S14, putative, expressed
LOC_Os04g33760Os.53796.1.S1_at11/114+20255902..20257262expressed protein
LOC_Os04g33770OsAffx.26312.1.S1_at11/114+20259479..20265096hypothetical protein
LOC_Os04g33780Os.8592.1.S1_at11/114+20270572..20275725OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g33790OsAffx.14117.1.S1_at10/114+20278820..20281888hypothetical protein
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26312.1.S1_at--451--4211Chr04:20263096..20263120 (25 bp)
CCGCCCTTTCACTGGACTAGAAGAT
LOC_Os04g33770
OsAffx.26312.1.S1_at--1021--751Chr04:20263422..20263446 (25 bp)
ATGTCAGACAACTGGAGCTACCCTC
LOC_Os04g33770
OsAffx.26312.1.S1_at--497--5611Chr04:20263791..20263814 (24 bp)
GACAAGCTCATTGGTGCACTTAGGT
LOC_Os04g33770
OsAffx.26312.1.S1_at--316--5971Chr04:20264476..20264500 (25 bp)
GAGAACGTGCAATCGGACGACTTTT
LOC_Os04g33770
OsAffx.26312.1.S1_at--791--10851Chr04:20264504..20264528 (25 bp)
TTGGGTGGTCATTCCATGCGCAGAC
LOC_Os04g33770
OsAffx.26312.1.S1_at--160--511Chr04:20264550..20264574 (25 bp)
ATCGTGTGCAGATTCCCTTGGGAAA
LOC_Os04g33770
OsAffx.26312.1.S1_at--272--5671Chr04:20264627..20264647 (21 bp)
GACATGCCCAGAATCGTCGGGTTGA
LOC_Os04g33770
OsAffx.26312.1.S1_at--952--4391Chr04:20264896..20264920 (25 bp)
GCCAAACTCAAGCATAGCCTTCTGA
LOC_Os04g33770
OsAffx.26312.1.S1_at--302--6691Chr04:20264934..20264958 (25 bp)
GTTGCCTTGGAATGCAGCCACTATC
LOC_Os04g33770
OsAffx.26312.1.S1_at--174--3271Chr04:20264990..20265014 (25 bp)
CAACTCTCGCTGCTATGGCAATGGA
LOC_Os04g33770
OsAffx.26312.1.S1_at--1157--1131Chr04:20265032..20265056 (25 bp)
AGTCCTCGAGCAGTTCCAACATGGG
LOC_Os04g33770
Target Sequence 
CCGCCCTTTCACTGGACTAGAAGATATGTCAGACAACTGGAGCTACCCTCCCCTGAACGATGCCATTGATGTGGCGGCAC
GGGAATTTTTGAGCAGCCACAGACTGCAGGAAGAGGTTTTACCCTTTCAAAAAGAAAATCAACAGGTTGTTTTAGTCTTG
ACAAGCTCATTGGTGCACTTAGGTTGTGCAACAGGACAAGAGCGAGAGAACGTGCAATCGGACGACTTTTGTGTTGGGTG
GTCATTCCATGCGCAGACCGGCTGCAGGGGCCTCGTGCAATCGTGTGCAGATTCCCTTGGGAAAGGGTGTCCAGGCGGAA
GTGACCGTTCTGCCCCCGCTGCGGACGAAGCAAAGCGACATGCCCAGAATCGTCGGGTTGATGAACTAGCCAAACTCAAG
CATAGCCTTCTGAAGTGCCGCCTACCGTTGCCTTGGAATGCAGCCACTATCCTCGAGCAGCTCCTGCGCAACCATCATCG
TGCAACTCTCGCTGCTATGGCAATGGAGTGCCACTGGCTGCCACAGTCCTCGAGCAGTTCCAACATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis