Browse Element(s) Details


OsAffx.26438.1.S1_x_at

Description tigr:9632.m04117
TID=OsAffx.26438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4302011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g43010NANA4+25232542..25232865retrotransposon protein, putative, unclassified
LOC_Os04g43020Os.56219.1.A1_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020OsAffx.26438.1.S1_x_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_x_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43030OsAffx.26669.1.S1_at11/114+25241151..25249210Lipase family protein, expressed
LOC_Os04g43040Os.19589.1.S1_at11/114+25249577..25252424expressed protein
LOC_Os04g43050Os.27988.1.A1_at11/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43050OsAffx.26439.1.S1_x_at10/114+25254997..25262379RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26438.1.S1_x_at--1107--9211Chr04:25239638..25239662 (25 bp)
TCCAGCAGCTGGTCGACCCGTCGAT
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--765--4851Chr04:25239674..25239698 (25 bp)
GCTACGGCTTCGAGAAGCTGGCCAA
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--972--2931Chr04:25239697..25239721 (25 bp)
AAGGCGGCGGCCATCGCGTCCATGT
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--781--531Chr04:25239709..25239733 (25 bp)
ATCGCGTCCATGTGCGTGCACGTCG
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--352--9051Chr04:25239767..25239791 (25 bp)
TGCAGGCCCTGAAGCTCATCTACAA
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--1074--4811Chr04:25239780..25239804 (25 bp)
GCTCATCTACAACGGCAACAACGAC
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--412--9331Chr04:25239871..25239895 (25 bp)
TCGCCGTGGAACAACCGCTCGTGGA
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--62--8171Chr04:25239878..25239902 (25 bp)
GGAACAACCGCTCGTGGAGCCACGA
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--39--1871Chr04:25239967..25239991 (25 bp)
ACGACGATGGACTACAGCTCGGACC
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--135--1911Chr04:25240045..25240069 (25 bp)
ACGTCGAGCCTGGTGCTGGACAAGA
LOC_Os04g43020
OsAffx.26438.1.S1_x_at--1037--2711Chr04:25240146..25240170 (25 bp)
AAGCATGAGCGAGCATGGCGGCCAT
LOC_Os04g43020
Target Sequence 
TCCAGCAGCTGGTCGACCCGTCGATGCCGGCGGCGAGCTACGGCTTCGAGAAGCTGGCCAAGGCGGCGGCCATCGCGTCC
ATGTGCGTGCACGTCGAGGCGTCGCACCGGCCGTTCATGGGCGAGGTCGTGCAGGCCCTGAAGCTCATCTACAACGGCAA
CAACGACGACACCTGCACCAGCGGCTCGTTCGGCGGCGGCGGCGGCGAGGAGTACGAGGACGAGGAGGCGTCGTCGCCGT
GGAACAACCGCTCGTGGAGCCACGACTTCGCCGCGACGCCGCCGCCGGCGTCGCGCAGGCTGGCGTTCCCGCGGGCTCCG
GCCCGCCCGACGACGATGGACTACAGCTCGGACCCGGCCGACGGGGCGGCGGGGACGTCGTCGGCGTCGGCGCGGCGGCA
GCGGTCGACGTCGAGCCTGGTGCTGGACAAGATCGAGTCGCTGGCGGCGTACGACTGGTCCGGCCCGCTGAGGGCCAGCA
GGGGGAGGAACTTCTACAGGCTGAGGGGAAGCATGAGCGAGCATGGCGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26438.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis