Browse Element(s) Details


OsAffx.26446.1.S1_at

Description tigr:9632.m04177
TID=OsAffx.26446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43560Os.36651.1.S1_at11/114+25554248..25557150NAC-domain containing protein 21/22, putative, expressed
LOC_Os04g43570OsAffx.26446.1.S1_at11/114+25565398..25565760hypothetical protein
LOC_Os04g43580OsAffx.26447.3.S1_at11/114+25570926..25572475expressed protein
LOC_Os04g43590Os.14491.2.S1_x_at1/114+25574061..25579334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43600NANA4+25580765..25582966transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43610NANA4+25584265..25587796transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26446.1.S1_at--1122--4691Chr04:25565647..25565671 (25 bp)
GCGGCGGAGCAAGGGCCAAAGCGAC
LOC_Os04g43570
OsAffx.26446.1.S1_at--59--3291Chr04:25565631..25565655 (25 bp)
CAAAGCGACGGCATTGGCAACGGCG
LOC_Os04g43570
OsAffx.26446.1.S1_at--721--1931Chr04:25565624..25565648 (25 bp)
ACGGCATTGGCAACGGCGGGAGCTG
LOC_Os04g43570
OsAffx.26446.1.S1_at--432--2291Chr04:25565582..25565606 (25 bp)
AAATGGGCCAAGGAACCATGAGCAC
LOC_Os04g43570
OsAffx.26446.1.S1_at--285--4391Chr04:25565576..25565600 (25 bp)
GCCAAGGAACCATGAGCACCAGGAT
LOC_Os04g43570
OsAffx.26446.1.S1_at--863--5411Chr04:25565570..25565594 (25 bp)
GAACCATGAGCACCAGGATACGGAT
LOC_Os04g43570
OsAffx.26446.1.S1_at--929--691Chr04:25565565..25565589 (25 bp)
ATGAGCACCAGGATACGGATGAGGA
LOC_Os04g43570
OsAffx.26446.1.S1_at--41--2911Chr04:25565508..25565532 (25 bp)
AAGGTCTCGATCTCTGAGTTGTCGT
LOC_Os04g43570
OsAffx.26446.1.S1_at--602--9391Chr04:25565502..25565526 (25 bp)
TCGATCTCTGAGTTGTCGTGCCTCG
LOC_Os04g43570
OsAffx.26446.1.S1_at--32--3851Chr04:25565495..25565519 (25 bp)
CTGAGTTGTCGTGCCTCGCCTCTGT
LOC_Os04g43570
OsAffx.26446.1.S1_at--879--6091Chr04:25565466..25565490 (25 bp)
GAGTCTGACCTCACCTGCCCGAGAG
LOC_Os04g43570
Target Sequence 
GCGGCGGAGCAAGGGCCAAAGCGACGGCATTGGCAACGGCGGGAGCTGGGGGTGGAGCGGGTGGGAAATGGGCCAAGGAA
CCATGAGCACCAGGATACGGATGAGGAGCAGCCCGCCGCCTCCGAGGCCGCACGCCATCAAGGTCTCGATCTCTGAGTTG
TCGTGCCTCGCCTCTGTCCTCGAGTCTGACCTCACCTGCCCGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis