Browse Element(s) Details


Os.36651.1.S1_at

Description gb:AK062955.1
DB_XREF= gi:32972973
TID=Os.36651.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-C12, full insert sequence.
FL= gb:AK062955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4356011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43519OsAffx.4076.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43519OsAffx.26444.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43540Os.46272.1.S1_at11/114+25532037..2553424660 ribosomal protein L14, putative, expressed
LOC_Os04g43550OsAffx.4077.1.S1_at11/114+25534608..25537480MazG nucleotide pyrophosphohydrolase domain protein, putative, expressed
LOC_Os04g43560Os.36651.1.S1_at11/114+25554248..25557150NAC-domain containing protein 21/22, putative, expressed
LOC_Os04g43570OsAffx.26446.1.S1_at11/114+25565398..25565760hypothetical protein
LOC_Os04g43580OsAffx.26447.3.S1_at11/114+25570926..25572475expressed protein
LOC_Os04g43590Os.14491.2.S1_x_at1/114+25574061..25579334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43600NANA4+25580765..25582966transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009790biological_processembryonic development
GO:0009908biological_processflower development
GO:0010014biological_processmeristem initiation
GO:0048467biological_processgynoecium development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36651.1.S1_at--903--5811Chr04:25556553..25556577 (25 bp)
GACCATACGGGCTCGTCGATGGGAT
LOC_Os04g43560
Os.36651.1.S1_at--278--5651Chr04:25556604..25556628 (25 bp)
GACAGCTCGAGCCATCAGTTGCTGA
LOC_Os04g43560
Os.36651.1.S1_at--483--9051Chr04:25556641..25556665 (25 bp)
TGCAGTGCAACTCGGTTCTCGATCA
LOC_Os04g43560
Os.36651.1.S1_at--648--10591Chr04:25556656..25556680 (25 bp)
TTCTCGATCATTTCCCGCAGGAGGT
LOC_Os04g43560
Os.36651.1.S1_at--528--991Chr04:25556674..25556698 (25 bp)
AGGAGGTGAACAGCTCGCCGATGAT
LOC_Os04g43560
Os.36651.1.S1_at--858--7971Chr04:25556726..25556750 (25 bp)
GGATGAATACGGCTTCTTCTACGAT
LOC_Os04g43560
Os.36651.1.S1_at--309--9571Chr04:25556740..25556764 (25 bp)
TCTTCTACGATACCGGCTTCGAGGA
LOC_Os04g43560
Os.36651.1.S1_at--128--1111Chr04:25556831..25556855 (25 bp)
AGTGAGATCATCGTGCCTGCGCGCA
LOC_Os04g43560
Os.36651.1.S1_at--67--1771Chr04:25556956..25556980 (25 bp)
ACCTGCATGAGATGGTTCGGTCACT
LOC_Os04g43560
Os.36651.1.S1_at--630--2991Chr04:25557009..25557033 (25 bp)
AATGTATCGCTCTACTCGTATGCAA
LOC_Os04g43560
Os.36651.1.S1_at--972--3011Chr04:25557042..25557066 (25 bp)
AATCCATCCCAAAGTTCCAGTTCAT
LOC_Os04g43560
Target Sequence 
GACCATACGGGCTCGTCGATGGGATTCGCGCCGAGGCAGAACGAGATACTCGACAGCTCGAGCCATCAGTTGCTGAACTT
GGCGATGCTGCAGTGCAACTCGGTTCTCGATCATTTCCCGCAGGAGGTGAACAGCTCGCCGATGATGGGGTTGGCAGGGT
CCATCGGAATTGGGGATGAATACGGCTTCTTCTACGATACCGGCTTCGAGGAGACGGCGAGCCTCGGGGGCATGAGGTTC
CCACAAGGGTGGAGTTGATGCCAATTGATCGTGCATGCAGTGAGATCATCGTGCCTGCGCGCATTTGCGAAGGAAAATGA
TTGAATTAATTCCATTGATACAGTTATTTCGTCCTAAAAAAATAAACTATTGCTACTGTAGGTAGTGTTTGGTTTAGCAT
AGAACCTGCATGAGATGGTTCGGTCACTTGAACTGTATATATATTGTGTGAGTCAAAATGTATCGCTCTACTCGTATGCA
AGTTGATACAATCCATCCCAAAGTTCCAGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis