Browse Element(s) Details


OsAffx.4077.1.S1_at

Description tigr:9632.m04175
TID=OsAffx.4077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MazG nucleotide pyrophosphohydrolase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4355011/11MazG nucleotide pyrophosphohydrolase domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43519OsAffx.4076.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43519OsAffx.26444.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43540Os.46272.1.S1_at11/114+25532037..2553424660 ribosomal protein L14, putative, expressed
LOC_Os04g43550OsAffx.4077.1.S1_at11/114+25534608..25537480MazG nucleotide pyrophosphohydrolase domain protein, putative, expressed
LOC_Os04g43560Os.36651.1.S1_at11/114+25554248..25557150NAC-domain containing protein 21/22, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4077.1.S1_at--35--9891Chr04:25534895..25534919 (25 bp)
TACTACGTCCATTAACACTTTCCAA
LOC_Os04g43550
OsAffx.4077.1.S1_at--236--151Chr04:25534928..25534952 (25 bp)
ATTACCTGCTAACTTTGCTGCATCC
LOC_Os04g43550
OsAffx.4077.1.S1_at--238--4771Chr04:25534944..25534968 (25 bp)
GCTGCATCCCTCTCGATGGATATAA
LOC_Os04g43550
OsAffx.4077.1.S1_at--999--9831Chr04:25534966..25534990 (25 bp)
TAAATACGCCTCTAGCTCTAACTTT
LOC_Os04g43550
OsAffx.4077.1.S1_at--1128--9511Chr04:25534982..25535006 (25 bp)
TCTAACTTTTTCCAAGCCACCAAGA
LOC_Os04g43550
OsAffx.4077.1.S1_at--843--2291Chr04:25535010..25535034 (25 bp)
AAAGGTACCGGCTTGATTGGCAGGT
LOC_Os04g43550
OsAffx.4077.1.S1_at--403--1051Chr04:25535031..25535055 (25 bp)
AGGTGTTGAGGCGATTCTTCTTCTT
LOC_Os04g43550
OsAffx.4077.1.S1_at--73--7391Chr04:25535156..25535180 (25 bp)
GTGAGCCTGAAGGAGCTGTCCAAGA
LOC_Os04g43550
OsAffx.4077.1.S1_at--112--4391Chr04:25535175..25535199 (25 bp)
CCAAGAAGCTCGATGACTTCGCCAA
LOC_Os04g43550
OsAffx.4077.1.S1_at--582--8031Chr04:25535212..25535236 (25 bp)
GGAGATGTACCATGCCCCGAGGAAC
LOC_Os04g43550
OsAffx.4077.1.S1_at--1156--4711Chr04:25536962..25536986 (25 bp)
GCTGTCGGAGCTGTTCATGTGGAAA
LOC_Os04g43550
Target Sequence 
TACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGC
CTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCT
TTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAAG
GAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCTCGATGACTTCGCCAAGGAGAGGGACTGGGA
GATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGATCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis