Browse Element(s) Details


OsAffx.26444.1.S1_at

Description tigr:9632.m04171
TID=OsAffx.26444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4351911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43519OsAffx.4076.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43519OsAffx.26444.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43540Os.46272.1.S1_at11/114+25532037..2553424660 ribosomal protein L14, putative, expressed
LOC_Os04g43550OsAffx.4077.1.S1_at11/114+25534608..25537480MazG nucleotide pyrophosphohydrolase domain protein, putative, expressed
LOC_Os04g43560Os.36651.1.S1_at11/114+25554248..25557150NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26444.1.S1_at--791--1531Chr04:25525872..25525896 (25 bp)
AGCAGGCGCTGGTTTGTGAAGAACT
LOC_Os04g43519
OsAffx.26444.1.S1_at--626--1231Chr04:25526105..25526129 (25 bp)
AGTTCGACGTCGAAGCCAGGCTGTT
LOC_Os04g43519
OsAffx.26444.1.S1_at--254--8331Chr04:25526152..25526175 (24 bp)
GGCTCCGTCATGCTCTTGTGCAAGT
LOC_Os04g43519
OsAffx.26444.1.S1_at--347--10811Chr04:25526167..25526483 (25 bp)
TTGTGCAAGTCCAAGCCTATGCCCG
LOC_Os04g43519
OsAffx.26444.1.S1_at--608--9191Chr04:25526504..25526528 (25 bp)
TGCCTCTATTTGACCTAGTCCACAA
LOC_Os04g43519
OsAffx.26444.1.S1_at--1102--6631Chr04:25526533..25526557 (25 bp)
GTTGTAGTCCTAGCTTACATAGCCA
LOC_Os04g43519
OsAffx.26444.1.S1_at--227--10491Chr04:25526547..25526571 (25 bp)
TTACATAGCCATCTGTCGTCTTCAA
LOC_Os04g43519
OsAffx.26444.1.S1_at--14--3651Chr04:25526566..25526717 (25 bp)
CTTCAACAACGGCTCACGAGTGGAG
LOC_Os04g43519
OsAffx.26444.1.S1_at--63--6931Chr04:25526720..25526744 (25 bp)
GTAGGCCTAGCCGAGAATGTCGTCT
LOC_Os04g43519
OsAffx.26444.1.S1_at--163--1471Chr04:25526733..25526757 (25 bp)
AGAATGTCGTCTTCAAACTCTGGAA
LOC_Os04g43519
OsAffx.26444.1.S1_at--196--3911Chr04:25526752..25526776 (25 bp)
CTGGAAGAGCGTCCGTATCATGCTA
LOC_Os04g43519
Target Sequence 
AGCAGGCGCTGGTTTGTGAAGAACTGCTTCAGCCACGGCCAGGTGACCGTGTCATACGCCGGCGTCCCGATGGGCGAAGG
GCGCGTCCGCGGCGGCGGCTTCTGCGCAGAGCCGAGGAGCGAGGAGGAGGCGGAGGTGAGCGCGGTGGCGCGCGGGCGGC
AAGGCGGGCACCGTGCCGCTGCCCGACAACCTGAGGAGGCGCATGGAGGCCGAGCTGCGGTGGGGGGCCGCGGAGTTCGA
CGTCGAAGCCAGGCTGTTCCGCAACGGCGGCGACACGCGCGGCTCCGTCATGCTCTTGTGCAAGTCCAAGCCTATGCCCG
CTATCTCTCTCTGCTCGGCCTGCCTCTATTTGACCTAGTCCACAATGAAGTTGTAGTCCTAGCTTACATAGCCATCTGTC
GTCTTCAACAACGGCTCACGAGTGGAGCTGTAGGCCTAGCCGAGAATGTCGTCTTCAAACTCTGGAAGAGCGTCCGTATC
ATGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis