Browse Element(s) Details


Os.46272.1.S1_at

Description gb:AK121631.1
DB_XREF= gi:37991254
TID=Os.46272.1
CNT=46
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050G01, full insert sequence.
FL= gb:AK119791.1 gb:AK062092.1 gb:AK121631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4354011/1160 ribosomal protein L14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43519OsAffx.4076.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43519OsAffx.26444.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43540Os.46272.1.S1_at11/114+25532037..2553424660 ribosomal protein L14, putative, expressed
LOC_Os04g43550OsAffx.4077.1.S1_at11/114+25534608..25537480MazG nucleotide pyrophosphohydrolase domain protein, putative, expressed
LOC_Os04g43560Os.36651.1.S1_at11/114+25554248..25557150NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46272.1.S1_at--711--10831Chr04:25532892..25532916 (25 bp)
TTGTGGATGCCCCTGATATGGTCCG
LOC_Os04g43540
Os.46272.1.S1_at--959--6491Chr04:25532878..25532902 (25 bp)
GATATGGTCCGCTGCCAGATAAACT
LOC_Os04g43540
Os.46272.1.S1_at--356--3431Chr04:25532863..25532887 (25 bp)
CAGATAAACTTCAAGCGGCTTTCTC
LOC_Os04g43540
Os.46272.1.S1_at--1026--4691Chr04:25532849..25532873 (25 bp)
GCGGCTTTCTCTGACTGACATTAAG
LOC_Os04g43540
Os.46272.1.S1_at--907--2651Chr04:25532815..25532839 (25 bp)
AAGCGTGTCCCTAAGAAGACCACCT
LOC_Os04g43540
Os.46272.1.S1_at--215--5371Chr04:25532801..25532825 (25 bp)
GAAGACCACCTTGATTAAGGCAATG
LOC_Os04g43540
Os.46272.1.S1_at--620--2811Chr04:25532496..25532608 (25 bp)
AAGATCAAGCGTGGCGGCGCTATCA
LOC_Os04g43540
Os.46272.1.S1_at--1066--3411Chr04:25532473..25532497 (25 bp)
CAGACAGGAGCTTGCTAAGCTTAAG
LOC_Os04g43540
Os.46272.1.S1_at--1155--7271Chr04:25532363..25532387 (25 bp)
GTGCCAGCCACTGTTATTGGGATCT
LOC_Os04g43540
Os.46272.1.S1_at--679--5471Chr04:25532319..25532343 (25 bp)
GAACTCCTGTGTTTAGACCTTGTGC
LOC_Os04g43540
Os.46272.1.S1_at--1144--3611Chr04:25532301..25532325 (25 bp)
CTTGTGCCACAAATTCTATTCAGAA
LOC_Os04g43540
Target Sequence 
TTGTGGATGCCCCTGATATGGTCCGCTGCCAGATAAACTTCAAGCGGCTTTCTCTGACTGACATTAAGATTGACATCAAG
CGTGTCCCTAAGAAGACCACCTTGATTAAGGCAATGGAGGAAGCTGATGTGAAGAACAAGTGGGAGAACAGCTCATGGGG
TAAGAAACTGATTGTCCAGAAGAGGAGAGCATCCCTCAACGACTTTGACAGGTTCAAGGTTATGTTGGCGAAGATCAAGC
GTGGCGGCGCTATCAGACAGGAGCTTGCTAAGCTTAAGAAGGAGGCTGCTGCGTAGATCATTTTGGTGGTGATCAGTTGA
GATTTTGATCAATGATGTTTGATGTCCCTAAATATGAAACATTGTGCCAGCCACTGTTATTGGGATCTCATGAAAAATTT
AAGTTTTGAACTCCTGTGTTTAGACCTTGTGCCACAAATTCTATTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis