Browse Element(s) Details


OsAffx.26447.3.S1_at

Description tigr:9632.m04178
TID=OsAffx.26447.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4358011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43560Os.36651.1.S1_at11/114+25554248..25557150NAC-domain containing protein 21/22, putative, expressed
LOC_Os04g43570OsAffx.26446.1.S1_at11/114+25565398..25565760hypothetical protein
LOC_Os04g43580OsAffx.26447.3.S1_at11/114+25570926..25572475expressed protein
LOC_Os04g43590Os.14491.2.S1_x_at1/114+25574061..25579334transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43600NANA4+25580765..25582966transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43610NANA4+25584265..25587796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43630OsAffx.26448.1.S1_at11/114+25597406..25597894hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26447.3.S1_at--569--3931Chr04:25571208..25571232 (25 bp)
CGGCGACAGCAGTGGCCTTCACGGC
LOC_Os04g43580
OsAffx.26447.3.S1_at--423--9951Chr04:25571097..25571121 (25 bp)
TACGCTCTCCTATTTGGTCGGTATG
LOC_Os04g43580
OsAffx.26447.3.S1_at--352--7811Chr04:25571082..25571106 (25 bp)
GGTCGGTATGCCAGATCGAGCACAT
LOC_Os04g43580
OsAffx.26447.3.S1_at--112--6911Chr04:25571077..25571101 (25 bp)
GTATGCCAGATCGAGCACATATATT
LOC_Os04g43580
OsAffx.26447.3.S1_at--134--10111Chr04:25571051..25571075 (25 bp)
TATGGTGCACTATAAGTTCGCGTAT
LOC_Os04g43580
OsAffx.26447.3.S1_at--760--10171Chr04:25571041..25571065 (25 bp)
TATAAGTTCGCGTATGCATGCATGT
LOC_Os04g43580
OsAffx.26447.3.S1_at--66--6711Chr04:25571036..25571060 (25 bp)
GTTCGCGTATGCATGCATGTTCATG
LOC_Os04g43580
OsAffx.26447.3.S1_at--558--4991Chr04:25571022..25571046 (25 bp)
GCATGTTCATGGTAATGGGTTTTAA
LOC_Os04g43580
OsAffx.26447.3.S1_at--510--3171Chr04:25570983..25571007 (25 bp)
AATTGTTCACGAACTCTGTCGTCGG
LOC_Os04g43580
OsAffx.26447.3.S1_at--1058--5451Chr04:25570973..25570997 (25 bp)
GAACTCTGTCGTCGGAAGTACCAGT
LOC_Os04g43580
OsAffx.26447.3.S1_at--30--9451Chr04:25570962..25570986 (25 bp)
TCGGAAGTACCAGTAGAAGTTGCTT
LOC_Os04g43580
Target Sequence 
CGGCGACAGCAGTGGCCTTCACGGCCACCAGCATCACCCGCCGCCTCCACCGCCTGCCGGCGCCGCCTGCTGAGAGCGGG
CGACCGAGCCGGCCGGCCGATCTACCTACGCTACGCTCTCCTATTTGGTCGGTATGCCAGATCGAGCACATATATTTTAT
GGTGCACTATAAGTTCGCGTATGCATGCATGTTCATGGTAATGGGTTTTAATTATTTGTGCTGCTAATTGTTCACGAACT
CTGTCGTCGGAAGTACCAGTAGAAGTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26447.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis