Browse Element(s) Details


OsAffx.26534.1.S1_at

Description tigr:9632.m04742
TID=OsAffx.26534.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4889011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed
LOC_Os04g48890OsAffx.26534.1.S1_at11/114+28941787..28942143hypothetical protein
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26534.1.S1_at--234--7971Chr04:28942073..28942097 (25 bp)
GGATCGTCGGATCCAGTGGCCCTAA
LOC_Os04g48890
OsAffx.26534.1.S1_at--509--8411Chr04:28942056..28942080 (25 bp)
GGCCCTAACTTCTTTGCTGGTGGAT
LOC_Os04g48890
OsAffx.26534.1.S1_at--875--3231Chr04:28942016..28942040 (25 bp)
CAAGAAGCACGAGCCATCGCGGGAT
LOC_Os04g48890
OsAffx.26534.1.S1_at--576--2871Chr04:28941966..28941990 (25 bp)
AAGTGTGGTGTGAGCAACACCGGAT
LOC_Os04g48890
OsAffx.26534.1.S1_at--566--2471Chr04:28941951..28941975 (25 bp)
AACACCGGATACGAGCGGGATCCAA
LOC_Os04g48890
OsAffx.26534.1.S1_at--535--1631Chr04:28941938..28941962 (25 bp)
AGCGGGATCCAAACGACAATGGCAA
LOC_Os04g48890
OsAffx.26534.1.S1_at--660--851Chr04:28941920..28941944 (25 bp)
ATGGCAACAGTGAGCAAATCCCGAC
LOC_Os04g48890
OsAffx.26534.1.S1_at--518--5951Chr04:28941909..28941933 (25 bp)
GAGCAAATCCCGACGATGATGACTA
LOC_Os04g48890
OsAffx.26534.1.S1_at--1148--671Chr04:28941891..28941915 (25 bp)
ATGACTATGACGAGCAGGATCCAAA
LOC_Os04g48890
OsAffx.26534.1.S1_at--728--3931Chr04:28941842..28941866 (25 bp)
CGGCTACGGTTGGATCAGGCGATCA
LOC_Os04g48890
OsAffx.26534.1.S1_at--749--8371Chr04:28941825..28941849 (25 bp)
GGCGATCATGGCATTAAGCTCTCCC
LOC_Os04g48890
Target Sequence 
GGATCGTCGGATCCAGTGGCCCTAACTTCTTTGCTGGTGGATCCGACTGGCTGGAGACAAGAAGCACGAGCCATCGCGGG
ATTGGCCAAGGAAGATGGGAAGATGGGAAGTGTGGTGTGAGCAACACCGGATACGAGCGGGATCCAAACGACAATGGCAA
CAGTGAGCAAATCCCGACGATGATGACTATGACGAGCAGGATCCAAATGGCAATGGTGGTAATAAGCGGAGCGGCTACGG
TTGGATCAGGCGATCATGGCATTAAGCTCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis