Browse Element(s) Details


OsAffx.26892.1.S1_at

Description tigr:9633.m01297
TID=OsAffx.26892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1477011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14720NANA5+8342908..8343768hypothetical protein
LOC_Os05g14730Os.14260.1.A1_at11/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14730OsAffx.26890.1.S1_at1/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14740Os.49700.1.S1_at11/115+8354097..8356143expressed protein
LOC_Os05g14740OsAffx.21636.1.S1_x_at1/115+8354097..8356143expressed protein
LOC_Os05g14750Os.5636.1.S1_at11/115+8358207..8361726Protein kinase PVPK-1, putative, expressed
LOC_Os05g14760NANA5+8362353..8362703hypothetical protein
LOC_Os05g14770OsAffx.26892.1.S1_at11/115+8366366..8367754hypothetical protein
LOC_Os05g14780NANA5+8371221..8374737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14790OsAffx.29786.1.S1_x_at1/115+8375229..8379131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14790OsAffx.23450.1.S1_at1/115+8375229..8379131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14800OsAffx.4338.1.S1_at8/115+8386618..8395281Cycloartenol synthase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26892.1.S1_at--678--791Chr05:8367297..8367321 (25 bp)
ATGGGCTGTTCGTGCAGGCCTACGA
LOC_Os05g14770
OsAffx.26892.1.S1_at--10--991Chr05:8367333..8367357 (25 bp)
AGGAGTACATCCTCACGCTGAAGTA
LOC_Os05g14770
OsAffx.26892.1.S1_at--305--351Chr05:8367369..8367393 (25 bp)
ATAACTCGTATCGTCTCATGGGTCG
LOC_Os05g14770
OsAffx.26892.1.S1_at--772--8631Chr05:8367387..8367411 (25 bp)
TGGGTCGTCCATGGAAGACATTTCT
LOC_Os05g14770
OsAffx.26892.1.S1_at--867--5371Chr05:8367412..8367436 (25 bp)
GAAGAATTGCAGTCTTACCCTCCAA
LOC_Os05g14770
OsAffx.26892.1.S1_at--54--4451Chr05:8367488..8367512 (25 bp)
GCCATTGCTAACGAGGCCATGATCG
LOC_Os05g14770
OsAffx.26892.1.S1_at--1080--6411Chr05:8367512..8367536 (25 bp)
GATCTATGGGTGTTTCGTTCTCAGA
LOC_Os05g14770
OsAffx.26892.1.S1_at--1056--2331Chr05:8367551..8367575 (25 bp)
AAAGACGACCACAATGACGGCCGCC
LOC_Os05g14770
OsAffx.26892.1.S1_at--124--8351Chr05:8367579..8367603 (25 bp)
GGCTGGTTATGGTGCACTACTTCAA
LOC_Os05g14770
OsAffx.26892.1.S1_at--1008--2311Chr05:8367602..8367626 (25 bp)
AAAGGTGATGCTCCACATGCTGACG
LOC_Os05g14770
OsAffx.26892.1.S1_at--508--2591Chr05:8367641..8367665 (25 bp)
AACGAGGAGCTACTACTGCTTGCGC
LOC_Os05g14770
Target Sequence 
ATGGGCTGTTCGTGCAGGCCTACGACCGCACCGGCGAGGAGTACATCCTCACGCTGAAGTACATTAAAGCTAATAACTCG
TATCGTCTCATGGGTCGTCCATGGAAGACATTTCTGAAGAATTGCAGTCTTACCCTCCAAGAAGACGCCAAGAAAAAGGG
TAAGAAGGCCATCAAAAAGGTGAAAAAGGTTGCCATTGCTAACGAGGCCATGATCGATCTATGGGTGTTTCGTTCTCAGA
AGTTGAGCCATGGCAAAGACGACCACAATGACGGCCGCCTCGGGCTGGTTATGGTGCACTACTTCAAAGGTGATGCTCCA
CATGCTGACGCCGCCTTCAAGGCCAACGAGGAGCTACTACTGCTTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis