Browse Element(s) Details


OsAffx.26890.1.S1_at

Description tigr:9633.m01293
TID=OsAffx.26890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cyclin A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g147301/11G2/mitotic-specific cyclin C13-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14680OsAffx.4336.1.S1_at11/115+8324748..8327179hypothetical protein
LOC_Os05g14690OsAffx.14694.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14690OsAffx.14695.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14700OsAffx.4337.1.S1_at11/115+8334786..8335061hypothetical protein
LOC_Os05g14710OsAffx.26888.1.S1_at11/115+8337768..8338391hypothetical protein
LOC_Os05g14720NANA5+8342908..8343768hypothetical protein
LOC_Os05g14730Os.14260.1.A1_at11/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14730OsAffx.26890.1.S1_at1/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14740Os.49700.1.S1_at11/115+8354097..8356143expressed protein
LOC_Os05g14740OsAffx.21636.1.S1_x_at1/115+8354097..8356143expressed protein
LOC_Os05g14750Os.5636.1.S1_at11/115+8358207..8361726Protein kinase PVPK-1, putative, expressed
LOC_Os05g14760NANA5+8362353..8362703hypothetical protein
LOC_Os05g14770OsAffx.26892.1.S1_at11/115+8366366..8367754hypothetical protein
LOC_Os05g14780NANA5+8371221..8374737retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26890.1.S1_at--51--8411Chr05:8348972..8348996 (25 bp)
GGCCCTGGAGGCAACCTTCGAGCAG
LOC_Os05g14730
OsAffx.26890.1.S1_at--944--9851NONE
TACAGTCAACACAAGGCACAATTGC
NONE
OsAffx.26890.1.S1_at--974--2231Chr05:8350030..8350054 (25 bp)
ACAATTGCCTCGTGCCAACTTGATG
NONE
OsAffx.26890.1.S1_at--426--8231Chr05:8350054..8350078 (25 bp)
GGCAAAAGCACACGGATCTTCTTCC
NONE
OsAffx.26890.1.S1_at--1032--10551Chr05:8350072..8350096 (25 bp)
TTCTTCCACTTTCCAATTTGAAAAG
NONE
OsAffx.26890.1.S1_at--386--4631Chr05:8350099..8350123 (25 bp)
GCGATTGCGGAATTTAAGCTTGCGA
NONE
OsAffx.26890.1.S1_at--878--2911Chr05:8350138..8350162 (25 bp)
AAGGAGGTGTGCACGCTTTTGCCAC
NONE
OsAffx.26890.1.S1_at--8--10371Chr05:8350154..8350178 (25 bp)
TTTTGCCACCAAGATGGTACGAGGC
NONE
OsAffx.26890.1.S1_at--755--1871Chr05:8350172..8350196 (25 bp)
ACGAGGCAACTTACCCCGTGGGATG
NONE
OsAffx.26890.1.S1_at--526--3251Chr05:8350178..8350202 (25 bp)
CAACTTACCCCGTGGGATGTGTTGA
NONE
OsAffx.26890.1.S1_at--943--7991Chr05:8350192..8350216 (25 bp)
GGATGTGTTGAAGGCCCACGATAAC
NONE
Target Sequence 
GGCCCTGGAGGCAACCTTCGAGCAGTTAGAGAAAAATACAGTCAACACAAGGCACAATTGCCTCGTGCCAACTTGATGGC
AAAAGCACACGGATCTTCTTCCACTTTCCAATTTGAAAAGTGGCGATTGCGGAATTTAAGCTTGCGAAAGATGGAAAATG
AAAGGAGGTGTGCACGCTTTTGCCACCAAGATGGTACGAGGCAACTTACCCCGTGGGATGTGTTGAAGGCCCACGATAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis