Browse Element(s) Details


OsAffx.4336.1.S1_at

Description tigr:9633.m01287
TID=OsAffx.4336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1468011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14600NANA5+8299488..8303111retrotransposon protein, putative, unclassified
LOC_Os05g14610NANA5+8303784..8307299hypothetical protein
LOC_Os05g14620NANA5+8307955..8308290prpol, putative
LOC_Os05g14629OsAffx.8338.1.S1_x_at1/115+8308685..8309563NA
LOC_Os05g14629OsAffx.22240.1.S1_x_at1/115+8308685..8309563NA
LOC_Os05g14640NANA5+8311811..8314447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14650NANA5+8314993..8316568retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14660NANA5+8318544..8318978hypothetical protein
LOC_Os05g14670NANA5+8319812..8321436retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14680OsAffx.4336.1.S1_at11/115+8324748..8327179hypothetical protein
LOC_Os05g14690OsAffx.14694.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14690OsAffx.14695.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14700OsAffx.4337.1.S1_at11/115+8334786..8335061hypothetical protein
LOC_Os05g14710OsAffx.26888.1.S1_at11/115+8337768..8338391hypothetical protein
LOC_Os05g14720NANA5+8342908..8343768hypothetical protein
LOC_Os05g14730Os.14260.1.A1_at11/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14730OsAffx.26890.1.S1_at1/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4336.1.S1_at--484--7811Chr05:8325324..8325348 (25 bp)
GGTCGGCATCATTCAACTGCATTTG
LOC_Os05g14680
OsAffx.4336.1.S1_at--380--7011Chr05:8325275..8325299 (25 bp)
GTACTATTACTTGAACCAGGCATCT
LOC_Os05g14680
OsAffx.4336.1.S1_at--643--10111Chr05:8325201..8325225 (25 bp)
TATGATGTACCTCCTGTTAGCACAC
LOC_Os05g14680
OsAffx.4336.1.S1_at--956--3811Chr05:8325174..8325198 (25 bp)
CTCCATGTTGCCTGTTAGCAGTGAT
LOC_Os05g14680
OsAffx.4336.1.S1_at--660--8511Chr05:8325087..8325111 (25 bp)
TGGCAAGCTGGATCCTCACGCAAGG
LOC_Os05g14680
OsAffx.4336.1.S1_at--135--8011Chr05:8325064..8325088 (25 bp)
GGATGGACTTACTGCTCAAAGCTCT
LOC_Os05g14680
OsAffx.4336.1.S1_at--635--2731Chr05:8325027..8325051 (25 bp)
AAGCAACACAAACTCTGACCTCATT
LOC_Os05g14680
OsAffx.4336.1.S1_at--69--10871Chr05:8324873..8324897 (25 bp)
TTGGACAACGGATCGGAGCTCCTCA
LOC_Os05g14680
OsAffx.4336.1.S1_at--641--9611Chr05:8324845..8324869 (25 bp)
TCATCTGGCTGCTCTTGGTTCATCA
LOC_Os05g14680
OsAffx.4336.1.S1_at--781--3491Chr05:8324822..8324846 (25 bp)
CATGGCCTCGGCAATGTGGCAGAGT
LOC_Os05g14680
OsAffx.4336.1.S1_at--793--10231Chr05:8324798..8324822 (25 bp)
TTTGGGTTAACACTAGGCCGCTATG
LOC_Os05g14680
Target Sequence 
GGTCGGCATCATTCAACTGCATTTGTTCACAGATATTTATACAACTTCAGTACTATTACTTGAACCAGGCATCTGGGAAG
AAAAGACAGGCATTGTATGGGAATGTGTGATGCTATCAAACTATATGATGTACCTCCTGTTAGCACACCCCTCCATGTTG
CCTGTTAGCAGTGATTACGCTGTGATGGAACATTTGAACTATATGGCTAAATTAGTGGACATGTACAAATATGCTGGTGG
CAAGCTGGATCCTCACGCAAGGATGGACTTACTGCTCAAAGCTCTTGAGCAAATGACAAGCAACACAAACTCTGACCTCA
TTGTTGTTGCTAGGGAACTCATTTATATTACTAGGGTCAGTGGCACATTATTGAAGTTGGTGAAGGAGACGTGGATACTC
CTCCTCATCTATGCTGCCAGCAAGAGCCGCGGTGAGCTCCACGCGCGTCGGTTGGACAACGGATCGGAGCTCCTCACCTT
CATCTGGCTGCTCTTGGTTCATCATGGCCTCGGCAATGTGGCAGAGTTTGGGTTAACACTAGGCCGCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis