Browse Element(s) Details


OsAffx.26888.1.S1_at

Description tigr:9633.m01291
TID=OsAffx.26888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1471011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14640NANA5+8311811..8314447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14650NANA5+8314993..8316568retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14660NANA5+8318544..8318978hypothetical protein
LOC_Os05g14670NANA5+8319812..8321436retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g14680OsAffx.4336.1.S1_at11/115+8324748..8327179hypothetical protein
LOC_Os05g14690OsAffx.14694.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14690OsAffx.14695.1.S1_at11/115+8329358..8332484hypothetical protein
LOC_Os05g14700OsAffx.4337.1.S1_at11/115+8334786..8335061hypothetical protein
LOC_Os05g14710OsAffx.26888.1.S1_at11/115+8337768..8338391hypothetical protein
LOC_Os05g14720NANA5+8342908..8343768hypothetical protein
LOC_Os05g14730Os.14260.1.A1_at11/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14730OsAffx.26890.1.S1_at1/115+8346652..8349581G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os05g14740Os.49700.1.S1_at11/115+8354097..8356143expressed protein
LOC_Os05g14740OsAffx.21636.1.S1_x_at1/115+8354097..8356143expressed protein
LOC_Os05g14750Os.5636.1.S1_at11/115+8358207..8361726Protein kinase PVPK-1, putative, expressed
LOC_Os05g14760NANA5+8362353..8362703hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26888.1.S1_at--718--2571Chr05:8337966..8337990 (25 bp)
AACGGCAGATGGCAGTGGGACAACG
LOC_Os05g14710
OsAffx.26888.1.S1_at--788--8131Chr05:8337983..8338007 (25 bp)
GGACAACGGCAAGCGAGGGTCGGTC
LOC_Os05g14710
OsAffx.26888.1.S1_at--1139--9331Chr05:8338006..8338030 (25 bp)
TCGCGGCCTTGTTCTTCCGGATGGA
LOC_Os05g14710
OsAffx.26888.1.S1_at--447--8791Chr05:8338015..8338039 (25 bp)
TGTTCTTCCGGATGGAGGCCACCGA
LOC_Os05g14710
OsAffx.26888.1.S1_at--496--871Chr05:8338108..8338132 (25 bp)
ATGGCGACCGTCGACGCATGGATCT
LOC_Os05g14710
OsAffx.26888.1.S1_at--278--832Chr05:8338125..8338149 (25 bp)
ATGGATCTCCGTCGTCAGGCCCTCT
LOC_Os05g14710
OsAffx.26888.1.S1_at--66--8211Chr05:8338178..8338202 (25 bp)
GGAATCCTTTGCCACCGCCAAGGGA
LOC_Os05g14710
OsAffx.26888.1.S1_at--470--10291Chr05:8338185..8338209 (25 bp)
TTTGCCACCGCCAAGGGAAACAGCC
LOC_Os05g14710
OsAffx.26888.1.S1_at--929--2871Chr05:8338197..8338221 (25 bp)
AAGGGAAACAGCCACCTCTTCACTG
LOC_Os05g14710
OsAffx.26888.1.S1_at--324--10511Chr05:8338215..8338239 (25 bp)
TTCACTGCGACAAGGTGCACGGCTG
LOC_Os05g14710
OsAffx.26888.1.S1_at--928--2891Chr05:8338226..8338250 (25 bp)
AAGGTGCACGGCTGGCGTTGTCGGG
LOC_Os05g14710
Target Sequence 
AACGGCAGATGGCAGTGGGACAACGGCAAGCGAGGGTCGGTCGCGGCCTTGTTCTTCCGGATGGAGGCCACCGACCGCCT
GGCGCCCAGCCCCACAGTCCTCCGACATCCGGCCCTGTGGCCATCCGCCGCCCGCACCTCCGATGGCGACCGTCGACGCA
TGGATCTCCGTCGTCAGGCCCTCTCTGCCACGCCGCTCCTCTGCCACTCGGGGGAATCCTTTGCCACCGCCAAGGGAAAC
AGCCACCTCTTCACTGCGACAAGGTGCACGGCTGGCGTTGTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis